Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0816 ATGGCCGCTGTTCGCCTCCTTCTCCTCCTCCTCTTCCCTTTCTCCTCTCTCTCCCTTTCTGAAAACGAAGCCCTTCTCAACCTCAAGAAATCATTCTCTAACCCCGTAGCTCTCTCTTCCTGGGTTCCCAACCAGAACCCTTGCTCCTCCAGGTGGCTCGGCGTCATCTGCTTCAACAACATCATCAACAGCCTCCACCTCGTCGACCTCTCCCTCTCCGGCGCCATCGATGTCAACGCCCTCACCCAAATCCCCACTCTCCGCTCCATCAGCTTCGTCAACAACTCCTTCTCCGGCCCAATCCCTCCCTTCAACCAACTCGGGGCCCTCAAGTCCCTGTACTTAGCCCACAACCAGTTCTCCGGCCAAATCCCCTCCGATTTCTTCTCGCAATTAGCTTCCTTGAAAAAAATATGGATCTCAAACAACAAGTTCTCCGGCCCCATCCCGTCTTCCTTGACCAACCTCGGCTTCCTCACCGAGCTCCACCTCGAGAACAACGAGTTCTCCGGCCCGGTGCCGGAGCTCAAGCAAGACATAAAATCCTTGGACATGTCGAACAACAAGCTCCAGGGAGAAATCCCCGCCGCCATGTCGAGGTTCGAAGCGAAGTCCTTCGCCAACAACGAAGGACTATGCGGGAAGCCGCTGAATAATGAGTGCGAGGCCGGTGGTAGTTCAGAAGTAGGGTCGGGTTGGGGGATGAAGGTGGTTATTGTCCTCATTGTCGCTGTTGCTTTGGCTTTCATTTTTGCGTTGACGCGGTCGAAGCGTCGACACGACGATGATTTCAGCGTGATGAGCAGGGATCACGTGGACGAGGTGGTGCAAGTGCACGTGCCGAGCTCGAACCATAGCAGGGGGGCCTCCGAGGGGGGGAGCAAGAAGGAGTCTTCTTCGTCGAAGAAAGGGTCTTCGCGGGGCGGCATGGGTGACCTTGTGATGGTGAACGACGAGAAGGGCGTGTTTGGCTTGCCCGATTTGATGAAGGCTGCGGCGGAGGTTCTCGGGAATGGTGGGTTGGGTTCGGCCTACAAAGCTGCCATGAACAATGGCCTCTCTGTGGTGGTCAAGCGGATGCGCGAGATGAATAAAGTCAGCAGAGACATCTTTGACGCCGAGATGAGACGCTTTGGGAGACTCAGAAACCTTAACATCATTACGCCTCTCGCTTATCATTACCGCAAGGAGGAAAAGCTGTTTGTCACCGAATACATGCCCAAAGGAAGCTTGCTATACGTCTTGCATGGTGACAGAGGATCGAGTCATGCTGACCTGAACTGGCCAATCCGTTTGAATATCGTGAAGGGAATTGCGCGAGGGTTGAACTTTATTTATTCAGAATTTTCCAACGAAGACCTGCCACATGGAAACCTGAAATCCAGCAATGTTCTACTAACTGAAAATTACGAGCCTCTCCTAAGCGATTTCGCCTTTCATCCACTCATCAACCCCAACTACGCCATACAGACAATGTTTGCCTACAAAACACCCGATTACGTATCATACCAGCATGTTTCACAGAAGACCGACGTGTATTGCCTCGGAATCATCGTTCTTGAAATCATCACTGGGAAATTCCCCTCTCAGTATCACAGTAATGGCAAGGGTGGCACTGACGTAGTGCACTGGGTGTTCACTGCGATTTCTGAGAGAAGAGAAGCGGAATTGATTGATCCAGAGTTAATGAGCAATCACTCGAACTCCCTCAATCAAATGTTGCAACTTCTCCAAGTAGGGGCTGCTTGCACGGAGAGCAACCCCGATCAACGACTTAACATGAAGGAAGCCATTAGAAGGATAGAGGAGGTTCAGGTTTAA 1821 0.5195 MAAVRLLLLLLFPFSSLSLSENEALLNLKKSFSNPVALSSWVPNQNPCSSRWLGVICFNNIINSLHLVDLSLSGAIDVNALTQIPTLRSISFVNNSFSGPIPPFNQLGALKSLYLAHNQFSGQIPSDFFSQLASLKKIWISNNKFSGPIPSSLTNLGFLTELHLENNEFSGPVPELKQDIKSLDMSNNKLQGEIPAAMSRFEAKSFANNEGLCGKPLNNECEAGGSSEVGSGWGMKVVIVLIVAVALAFIFALTRSKRRHDDDFSVMSRDHVDEVVQVHVPSSNHSRGASEGGSKKESSSSKKGSSRGGMGDLVMVNDEKGVFGLPDLMKAAAEVLGNGGLGSAYKAAMNNGLSVVVKRMREMNKVSRDIFDAEMRRFGRLRNLNIITPLAYHYRKEEKLFVTEYMPKGSLLYVLHGDRGSSHADLNWPIRLNIVKGIARGLNFIYSEFSNEDLPHGNLKSSNVLLTENYEPLLSDFAFHPLINPNYAIQTMFAYKTPDYVSYQHVSQKTDVYCLGIIVLEIITGKFPSQYHSNGKGGTDVVHWVFTAISERREAELIDPELMSNHSNSLNQMLQLLQVGAACTESNPDQRLNMKEAIRRIEEVQV* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0816 606 SUPERFAMILY L domain-like 18 201 - -
Gso13g0816 606 Gene3D Ribonuclease Inhibitor 180 218 IPR032675 -
Gso13g0816 606 SUPERFAMILY Protein kinase-like (PK-like) 334 601 IPR011009 -
Gso13g0816 606 Gene3D Transferase(Phosphotransferase) domain 1 407 606 - -
Gso13g0816 606 MobiDBLite consensus disorder prediction 278 312 - -
Gso13g0816 606 Pfam Leucine rich repeat 110 168 IPR001611 GO:0005515
Gso13g0816 606 Gene3D Phosphorylase Kinase; domain 1 336 406 - -
Gso13g0816 606 ProSiteProfiles Protein kinase domain profile. 330 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0816 606 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 6 606 - -
Gso13g0816 606 Pfam Leucine rich repeat N-terminal domain 20 57 IPR013210 -
Gso13g0816 606 Pfam Protein kinase domain 334 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0816 606 Gene3D Ribonuclease Inhibitor 129 177 IPR032675 -
Gso13g0816 606 Gene3D Ribonuclease Inhibitor 20 128 IPR032675 -
Gso13g0816 606 PANTHER LRR RECEPTOR-LIKE KINASE 6 606 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0816 Gso-Chr13 22461750 22464963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0816 1 606 Receptor kinase-like Gene Family AT3G42880 52.044 0.0 632
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gso13g0816 Pkinase 3.5e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0816 - - gmx:100788667 1130.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0816 13 22461750 22464963 Gso17g0396 17 3636794 3640210 GST
Gso13g0816 13 22461750 22464963 Gso15g1482 15 17247163 17250637 PCT
Gso15g1482 15 17247163 17250637 Gso13g0816 13 22461750 22464963 PCT