Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0806 ATGGGATCGAGCTTCTCTAGTTGTTATGAGGGTGAGTCTGTGTCACCTTCTCCGAAGCCAACCAAAGTGGTGGCTACAAAGGGTGGTTCTTCTTCCAACAGGGTCTCTATAACGGACTTGAGTTTCCCTGGCTCAACGCTTTCGGAGGATCTCTCCGTTTCTCTAGTGGGGTCTAACCTGCATGTGTTTTCGCTCTCGGAGCTCAAGATCATCACGCAGAGTTTCTCTTCGAGTAATTTTCTCGGCGAAGGAGGTTTCGGACCCGTGCACAAGGGCTTCATTGATGACAAGCTTAGGCCTGGTCTCGAGGCTCAACCGGTGGCCGTCAAGCTCTTGGACTTGGACGGTTCTCAGGGCCATAAAGAGTGGTTGACTGAAGTTGTGTTTCTGGGTCAACTAAGGCATCCACATCTGGTGAAGCTGATTGGATATTGCTGTGAAGAAGAACACAGGCTTCTGGTATATGAGTATTTACCACGAGGCAGCTTAGAGAATCAACTATTTAGAAGATATACAGCATCGTTACCATGGTCAACAAGGATGAAAATTGCAGCTGGAGCTGCAAAGGGTCTAGCCTTTCTACATGAAGCGAAAAAACCAGTCATCTATAGAGATTTCAAAGCTTCAAACATCTTGTTAGACTCGGATTATAATGCAAAGCTTTCTGATTTTGGCTTGGCAAAAGATGGTCCCGAAGGAGATGACACACACGTTTCAACTAGAGTCATGGGCACACAAGGCTATGCGGCCCCAGAATACATCATGACAGGACACTTGACAGCAATGAGTGATGTGTACAGTTTTGGAGTTGTGCTCTTGGAGCTTCTAACAGGAAGAAGGTCAGTGGACAAAGGGCGCCCACAAAGAGAACAGAACCTCGTGGAATGGGCCAGGCCTGCTTTGAATGATTCCCGGAAACTTGGCAGAATAATGGATCCAAGGCTTGAGGGTCAGTATTCTGAGGTTGGGGCGAGAAAAGCAGCTGCATTGGCTTACCAATGCCTCAGCCACAGGCCAAGGAGTAGACCCTTAATGAGCACTGTGGTTAATGTTCTTGAGCCACTTCAGGACTTTGATGATGTTCCAATTGGACCCTTTGTTTACACTGTTCCAGCTGAACAACACAATGAAGTGGCAAAAGAGAGTGAAACACCTAAGGAGAGGAAGAGGGAAAATGATCATCATCATCATAATCGGCATCATCATCATCATCGCCACAATGGCCATAGGCATCATCCACTTAAATCTCCCAAGACACCAATGTCATCAGATCAGTCACAGAATGATGAACACCGAAATGGTAGAAGAAGTGGGTCTAATTCACCTGACACATCCAATGCATCAGAAGCGCAATGA 1356 0.4676 MGSSFSSCYEGESVSPSPKPTKVVATKGGSSSNRVSITDLSFPGSTLSEDLSVSLVGSNLHVFSLSELKIITQSFSSSNFLGEGGFGPVHKGFIDDKLRPGLEAQPVAVKLLDLDGSQGHKEWLTEVVFLGQLRHPHLVKLIGYCCEEEHRLLVYEYLPRGSLENQLFRRYTASLPWSTRMKIAAGAAKGLAFLHEAKKPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTQGYAAPEYIMTGHLTAMSDVYSFGVVLLELLTGRRSVDKGRPQREQNLVEWARPALNDSRKLGRIMDPRLEGQYSEVGARKAAALAYQCLSHRPRSRPLMSTVVNVLEPLQDFDDVPIGPFVYTVPAEQHNEVAKESETPKERKRENDHHHHNRHHHHHRHNGHRHHPLKSPKTPMSSDQSQNDEHRNGRRSGSNSPDTSNASEAQ* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0806 451 MobiDBLite consensus disorder prediction 372 451 - -
Gso13g0806 451 Pfam Protein tyrosine and serine/threonine kinase 79 351 IPR001245 GO:0004672|GO:0006468
Gso13g0806 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Gso13g0806 451 SUPERFAMILY Protein kinase-like (PK-like) 50 353 IPR011009 -
Gso13g0806 451 Gene3D Phosphorylase Kinase; domain 1 44 157 - -
Gso13g0806 451 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 21 408 - -
Gso13g0806 451 ProSiteProfiles Protein kinase domain profile. 75 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0806 451 PANTHER OS01G0588500 PROTEIN-RELATED 21 408 - -
Gso13g0806 451 MobiDBLite consensus disorder prediction 1 31 - -
Gso13g0806 451 Gene3D Transferase(Phosphotransferase) domain 1 158 361 - -
Gso13g0806 451 MobiDBLite consensus disorder prediction 392 416 - -
Gso13g0806 451 CDD STKc_IRAK 81 355 - -
Gso13g0806 451 MobiDBLite consensus disorder prediction 376 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0806 Gso-Chr13 22369947 22372448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0806 61 390 Glycoside Hydrolase AT3G07070 51.198 1.02e-103 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso13g0806 PK_Tyr_Ser-Thr 2.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0806 - - gmx:100799411 882.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0806 13 22369947 22372448 Gso17g0404 17 3716408 3718971 GST
Gso13g0806 13 22369947 22372448 Gso15g1472 15 16983954 16987850 PCT
Gso13g0806 13 22369947 22372448 Gso9g0588 9 7003812 7007518 PCT
Gso15g1472 15 16983954 16987850 Gso13g0806 13 22369947 22372448 PCT
Gso9g0588 9 7003812 7007518 Gso13g0806 13 22369947 22372448 PCT