Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0794 ATGAATGGAAGGAACGTTAACACAAACAGGTTCCCTTTCACTCCTTCCCAGTGGCAAGAGCTTGAACACCAAGCTCTCATCTACAAATACATGGCTTCAGGTATCTCCATCCCCCCTGACCTTCTCTTCACCATCAAAAGAACAACCCACTTGGACTCCTCAAGACTATTGCCTCACCACCCTCAACACTTTGGATGGAACTATTTGCCAATGGGGTTGGGGAGGAAAATAGACCCGGAGCCAGGGAGGTGTAGAAGAACAGATGGAAAGAAATGGAGGTGCTCAAAGGAGGCGTATCCAGATTCAAAGTACTGTGAGAGGCACATGCACAGAGGGAAAAATCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACACCAACGACAGCAGCAGTGGCAACAAACACAGATGCCTCAACCCCAACAACAATCTTATCAATCACCAAAAACAGTCCTTCACATGCACTCTCCCCAACCACTCATTCTCTCTCTCATGACACTTACCATCATCATCATCATCACCCTCACCCTCAGCAACATTCCTCCCACTCCTTCCTCTATCATCATTCTTCGAGGCCCTCTTCCGGTGCTGCTTTGTCATTTCAAGACAACAGTGCCCCCTTGTTTCTCGACACTGCTTCTTGCTCTCAGAATAACAACAACACTGACTGCAGGAACAGGTATGTGTATGGACTGAAGGAGGAGGTGGACGAGCATGCCTTCTTCACAGAACCTTCTGGAACTATGAGAAGCTTCTCTGCTTCCTCAATGGAAGATTCATGGCAACTCACACCACTGACTATAAGCTCCTCTTCCTCTTCGAAACAGAGGAACTGCTCTGGTTTATCCAATGACAACAACGAGTACTCCTACTTGCAACTTCAGAGCCTCAATGGCAACAACTCAAAACAGCCGCAACAAGATCAAGGTTGCTACATATCAGGCAGTGATGTCAAGTGCGAAACATTCATGAAACTTGGGAAAGAAGAACCTCAGAAAACCGTTCATCGCTTCTTCGATGAATGGCCCCCTAAAAGCAGAGGATCGTGGCTTGATTTGGATGATAAATCATCCACCACCCAGCTTTCAATTTCCATTCCAACTTCTACTCATGATTTTGCAACTTTCAATTCAACAACCCAACGAGATGGTTGA 1155 0.4615 MNGRNVNTNRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFTIKRTTHLDSSRLLPHHPQHFGWNYLPMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTPTTAAVATNTDASTPTTILSITKNSPSHALSPTTHSLSHDTYHHHHHHPHPQQHSSHSFLYHHSSRPSSGAALSFQDNSAPLFLDTASCSQNNNNTDCRNRYVYGLKEEVDEHAFFTEPSGTMRSFSASSMEDSWQLTPLTISSSSSSKQRNCSGLSNDNNEYSYLQLQSLNGNNSKQPQQDQGCYISGSDVKCETFMKLGKEEPQKTVHRFFDEWPPKSRGSWLDLDDKSSTTQLSISIPTSTHDFATFNSTTQRDG* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0794 384 Pfam QLQ 12 45 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gso13g0794 384 ProSiteProfiles QLQ domain profile. 12 47 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gso13g0794 384 SMART QLQ_2 11 47 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gso13g0794 384 Pfam WRC 79 121 IPR014977 -
Gso13g0794 384 PANTHER - 5 360 IPR031137 GO:0005634|GO:0006351|GO:0032502
Gso13g0794 384 MobiDBLite consensus disorder prediction 109 190 - -
Gso13g0794 384 ProSiteProfiles WRC domain profile. 78 122 IPR014977 -
Gso13g0794 384 MobiDBLite consensus disorder prediction 121 163 - -
Gso13g0794 384 PANTHER GROWTH-REGULATING FACTOR 5 5 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0794 Gso-Chr13 22266329 22269003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0794 3 121 GRF Transcription Factor Family AT3G13960 67.213 1.06e-52 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Gso13g0794 WRC 8.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0794 - - gmx:100783524 729.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0794 13 22266329 22269003 Gso17g0418 17 3815837 3818482 GST
Gso13g0794 13 22266329 22269003 Gso15g1461 15 16789373 16791828 PCT
Gso13g0794 13 22266329 22269003 Gso9g0579 9 6839345 6841746 PCT
Gso15g1461 15 16789373 16791828 Gso13g0794 13 22266329 22269003 PCT
Gso9g0579 9 6839345 6841746 Gso13g0794 13 22266329 22269003 PCT