Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0791 ATGGGGAGAAGCCCTTGTTGTTCAAAGGAGGGTTTGAATAGAGGTGCTTGGACAGCTCATGAAGACAAAATCCTCAGAGAATACATTAGAGTCCATGGTGAAGGAAGATGGAGAAACCTTCCCAAAAGAGCAGGTTTGAAAAGATGTGGAAAAAGTTGCAGACTTAGATGGTTGAATTATCTCAGACCAGATATTAAGAGAGGCAATATATCCCCAGATGAAGAAGAGCTCATCATCAGGCTACACAAGCTCCTGGGAAACAGATGGTCTTTAATAGCTGGGAGGCTTCCAGGACGAACAGACAATGAAATAAAGAATTATTGGAACACCAATTTAGGAAAAAAGGTGAAAGATGGCCACCAAACCACTGCAAACAACACACAGAATCCAATGCCCCATTTGGCCCCCATTCATATGGCCACTTCCTCAATCTCCCTATCTCCTCCTAAACTAGATTCTCGTGTTGTCCGTACAAAGGCTACCAAGTGCTCCAAGGTATTATTCCTAAACCCACCCCCTCACCCATCAATGCCGAACAAGTCCAAGACTGAGGCAGAGGCAGAAGCAAGGCTTGTGGATGGTGTAATTAGTAACCAAATGGAACACACTACATACGACAATGGGTTCCTGTCGTTTCCAGACGAAGAAAAAGAACTCTCAACAGATTTTCTCATAGATTTCAACGTGGGGGATGTTTGCTTGTCTGATCTACTCAACTCAGATTTCTCAAACACGTACAATTTCAGCTGCACTAATGTTAACCACCACGAGCAGTTATCGCCTTGTTCGGACCAACCTGATGCCATGTTCTCAGATGAAGTTCTCAAGGACTGGACACACAGCAATTTTGCAGACGAAGCGAATGCTTCCAACAACCTTCATTCTTTCATTTCGTTTGAGTCTACTGAGGAATGA 915 0.4383 MGRSPCCSKEGLNRGAWTAHEDKILREYIRVHGEGRWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISPDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVKDGHQTTANNTQNPMPHLAPIHMATSSISLSPPKLDSRVVRTKATKCSKVLFLNPPPHPSMPNKSKTEAEAEARLVDGVISNQMEHTTYDNGFLSFPDEEKELSTDFLIDFNVGDVCLSDLLNSDFSNTYNFSCTNVNHHEQLSPCSDQPDAMFSDEVLKDWTHSNFADEANASNNLHSFISFESTEE* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0791 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso13g0791 304 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Gso13g0791 304 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gso13g0791 304 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso13g0791 304 CDD SANT 16 61 IPR001005 -
Gso13g0791 304 PANTHER TRANSCRIPTION FACTOR TT2 1 260 - -
Gso13g0791 304 SMART sant 13 63 IPR001005 -
Gso13g0791 304 SMART sant 66 114 IPR001005 -
Gso13g0791 304 Gene3D - 14 66 - -
Gso13g0791 304 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso13g0791 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso13g0791 304 Gene3D - 70 133 - -
Gso13g0791 304 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso13g0791 304 CDD SANT 71 112 IPR001005 -
Gso13g0791 304 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0791 Gso-Chr13 22240886 22242588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0791 1 193 MYB Transcription Factor Family AT2G47460 49.275 1.71e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso13g0791 Myb_DNA-binding 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0791 K09422 - gmx:100781908 638.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0791 13 22240886 22242588 Gso17g0421 17 3835676 3837337 GST