Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0787 ATGGGTGATTTCCAAGGCCCCTTCATAGTGTCACCCCCTCCTTCACTCTCTTCCTCGGATAAGTCCAGCACAACCATGCTATACTATGGGTTAGTAGTGGTGGGGGTTGCAGCCATGGCATTAGCCCTATACAACTTCGTCATCATCAAGCGAAGTAGAAGGCGCCATATGCAATCACAGGCTGAAGGGGCAAATGGGTTGGTGGAGGTGGCGATGGAAAGTAGTAGAATTGAGAACTGCCAAAGGAACAACTTCAACTTGCTCTCAAGCTTCAAGTACAAGAAAGAAGCAGCAAAAGAAGGAAGTGGAGATGGTGATTATGATTATGATGATGAATGCCCAGTTTGCTTATCGGGTTTTGAAGAAGGGGAAGAAGTGAGGAAGCTGCCACGGTGCAAGCACTGGTTCCACGCACCATGCATAGACATGTGGCTCTACTCCCATTTCGATTGTCCAATTTGTCGAACACCTGTTGGGCAATTCTACCACCGTTTCCATTCTGGTCCGGAGTTGCTGGAATCCGGTGGTGGCGTCTCCGTATGA 543 0.488 MGDFQGPFIVSPPPSLSSSDKSSTTMLYYGLVVVGVAAMALALYNFVIIKRSRRRHMQSQAEGANGLVEVAMESSRIENCQRNNFNLLSSFKYKKEAAKEGSGDGDYDYDDECPVCLSGFEEGEEVRKLPRCKHWFHAPCIDMWLYSHFDCPICRTPVGQFYHRFHSGPELLESGGGVSV* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0787 180 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Gso13g0787 180 PANTHER RING-H2 FINGER PROTEIN ATL52-LIKE 11 163 - -
Gso13g0787 180 Pfam Ring finger domain 111 155 IPR001841 -
Gso13g0787 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 159 IPR013083 -
Gso13g0787 180 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 163 IPR044675 -
Gso13g0787 180 SUPERFAMILY RING/U-box 108 161 - -
Gso13g0787 180 SMART ring_2 113 154 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0787 Gso-Chr13 22212190 22212732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0787 30 158 C3H Transcription Factor Family AT5G17600 39.535 1.42e-20 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0787 - - gmx:102668213 339.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0787 13 22212190 22212732 Gso17g0424 17 3868067 3868618 GST
Gso13g0787 13 22212190 22212732 Gso15g1431 15 16057419 16058195 PCT
Gso15g1431 15 16057419 16058195 Gso13g0787 13 22212190 22212732 PCT