LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso13g0785	ATGCTTACGTGCATAGCTCGTCCAAAGAAACCTGATGAGTCGGATCCAAACAACGCGACAAGCGCCGCTAAATCGCAAGCCGTCAAATCTCTCACTTCTCAGATAAGGGATATGGCGCTGAAGGCTTCGGGAGCGTACAAGCATTGCGCACCGTGCACGGGGCCAGCGACGCAGGGGCGATTTCGGAGCAACACCACCGAGTCGGACGCGGATTCGGACCGGTTCCGGTGGTCGTACCGGAGAACGGGGAGTTCGAGCTCGACGACGACAAGGACGTGGGGGAAGGAGATGGAGGCGCGGCTGAAGGGGATTTCGAGCGGGGAGGGGACGCCGAACTCCGCCAGCGGGAGGCGGGCGGAGCCGGTGGTGCTGTTTGTTGAAGAGAACGAGCCGAAGGAGTGGGTGGCGCAGGTGGAGCCTGGCGTTTTGATTACGTTCGTTTCGTTGCCACGTGGCGGGAACGATCTGAAGCGCATACGGTTCAGTCGAGAGATGTTCAATAAATGGCAAGCTCAAAGGTGGTGGGCAGAGAACTACGACAAGGTTATGGAACTTTACAATGTTCAAAGGTTTAACCGCCAAGCATTTCCTCTTCCAACGCCACCAAGATCTGAAGATGAGAGCTCAAAGCTTGAATCAGCTGAAGAAAGCCCCGTAACACCTCCACTGAACAGGGAACGGTTACCTCGTAATATGTACCGTCCAACAGGGATGGGAATGGGATACTCATCCTCAGATTCCTTTGATCATCAGTCAATGCAATCTCGGCATTTCTATGACTCAAATGGTATGAACTCAACACCGAAAGTGTCCACCATTAGTGCGGCCAAAACGGAGATATCATCAATGGATGCTTCTATCAGAAGTAGCTCATCGAGAGAGGCTGATCGCTCCGGTGATTTTTCAATCAGCAATGCTAGTGATTTGGAGACTGAATGGGTTGAACAGGATGAACCTGGGGTTTACATTACGATCAGAGCATTGCCAGGTGGTGCAAGAGAGCTCAAACGAGTCAGGTTCAGCCGAGAAAAATTTGGGGAGATGCATGCTAGATTATGGTGGGAAGAGAACCGTGCCAGAATACATGAACAATACTTGTGA	1101	0.5223	MLTCIARPKKPDESDPNNATSAAKSQAVKSLTSQIRDMALKASGAYKHCAPCTGPATQGRFRSNTTESDADSDRFRWSYRRTGSSSSTTTRTWGKEMEARLKGISSGEGTPNSASGRRAEPVVLFVEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSREMFNKWQAQRWWAENYDKVMELYNVQRFNRQAFPLPTPPRSEDESSKLESAEESPVTPPLNRERLPRNMYRPTGMGMGYSSSDSFDHQSMQSRHFYDSNGMNSTPKVSTISAAKTEISSMDASIRSSSSREADRSGDFSISNASDLETEWVEQDEPGVYITIRALPGGARELKRVRFSREKFGEMHARLWWEENRARIHEQYL*	367

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gso13g0785	366	ProSiteProfiles	BRX domain profile.	132	187	IPR013591	-
Gso13g0785	366	ProSiteProfiles	BRX domain profile.	311	366	IPR013591	-
Gso13g0785	366	MobiDBLite	consensus disorder prediction	195	249	-	-
Gso13g0785	366	PANTHER	PROTEIN BREVIS RADIX-LIKE 4	1	366	-	-
Gso13g0785	366	MobiDBLite	consensus disorder prediction	1	28	-	-
Gso13g0785	366	Pfam	Transcription factor BRX N-terminal domain	20	52	IPR027988	-
Gso13g0785	366	Pfam	Transcription factor regulating root and shoot growth via Pin3	132	186	IPR013591	-
Gso13g0785	366	Pfam	Transcription factor regulating root and shoot growth via Pin3	310	365	IPR013591	-
Gso13g0785	366	PANTHER	PROTEIN BREVIS RADIX-LIKE 1	1	366	IPR044532	-
Gso13g0785	366	MobiDBLite	consensus disorder prediction	47	69	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso13g0785	Gso-Chr13	22187030	22192675	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso13g0785	1	366	Major Intrinsic Protein MIP	AT1G31880	44.845	5.42e-94	283

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso13g0785	-		-	gmx:100794109	704.516

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Gso13g0785	13	22187030	22192675	Gso17g0427	17	3883670	3889540	GST
Gso13g0785	13	22187030	22192675	Gso15g1429	15	15972246	15980143	PCT
Gso15g1429	15	15972246	15980143	Gso13g0785	13	22187030	22192675	PCT

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