Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0782 ATGCCTCATCAAATCCCAAAGGCTCATACTTCTTATCCTTGTGGTGATCCTTATTTTGGTAGTTCAATAGTTGCTTATGGAACACAGGCTATTACTCAACAAATGGTGCCCCAGATGCTGGGATTAGCATCCACCAGAATTGCATTACCAGTTGAGCTTGCAGAAGATGGGCCCATTTATGTCAATGCCAAACAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAGCTTAAGGCTCAAAACAAACTCATCAAAAGTCGTAAGCCATATCTTCATGAGTCTCGGCACCGCCACGCATTGAAAAGGGTTAGGGGAACTGGGGGGCGCTTTCTTAGTGCCAAACAGCTTCAACAGTTTAATGCAGAACTTGTCACCGATGCCCATTCAGGCCCGGGCCCTGTCAATGTTTATCAAAAGAAAGATGCATCTGAGGCAGAAAGTCATCCCTCAAGAACTGGAAAAAATGCATCTATCACATTCACAGCAATCTCTGGCTTGACAAGTATGTCCGGTAACAGTGTCAGTTTCAGGCGGCCTGAGCACAACTTCTTGGGGAACTCTCCTAATATAGGTGGATCGTCGCAATGCAGTGGGGGACTCACCTTTGGTGGTGGAGCTCGGCAATGTACTTCAGTTGGCCGGTGA 651 0.4685 MPHQIPKAHTSYPCGDPYFGSSIVAYGTQAITQQMVPQMLGLASTRIALPVELAEDGPIYVNAKQYHGILRRRQSRAKLKAQNKLIKSRKPYLHESRHRHALKRVRGTGGRFLSAKQLQQFNAELVTDAHSGPGPVNVYQKKDASEAESHPSRTGKNASITFTAISGLTSMSGNSVSFRRPEHNFLGNSPNIGGSSQCSGGLTFGGGARQCTSVGR* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0782 216 Gene3D - 55 117 - -
Gso13g0782 216 PRINTS CCAAT-binding transcription factor subunit B signature 58 80 IPR001289 GO:0003700|GO:0006355
Gso13g0782 216 PRINTS CCAAT-binding transcription factor subunit B signature 89 112 IPR001289 GO:0003700|GO:0006355
Gso13g0782 216 SMART cbf3 54 115 IPR001289 GO:0003700|GO:0006355
Gso13g0782 216 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 8 210 - -
Gso13g0782 216 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 8 210 IPR001289 GO:0003700|GO:0006355
Gso13g0782 216 ProSiteProfiles NF-YA/HAP2 family profile. 55 115 IPR001289 GO:0003700|GO:0006355
Gso13g0782 216 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 58 112 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0782 Gso-Chr13 22162065 22166696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0782 7 120 CCAAT-HAP2 Transcription Factor Family AT1G17590 59.130 1.47e-38 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gso13g0782 CBFB_NFYA 2.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0782 K08064 - gmx:100792905 422.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0782 13 22162065 22166696 Gso17g0429 17 3903860 3908743 GST