Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0780 ATGGACGGTGGAGTGAACTACAACCCTCGCACTGTGGAAGAGGTTTTCCGGGACTTCAAGGGTCGTAGAGCCGGCATGATCAAGGCTCTCACCACTGATGTTGAAGAATTTTTCCAGCAGTGCGATCCTGAAAAGGATAACCTTTGTTTATACGGGTTCCCTAATGAGCAATGGGAAGTTAATTTACCTGCGGAAGAAGTTCCTCCGGAGCTTCCTGAGCCTGCATTGGGCATAAACTTTGCTAGGGATGGGATGCAGGATAAGGACTGGCTGTCTTTGGTTGCCGTTCACAGTGATGCATGGTTACTTGCAGTGGCTTTCTACTTTGGGGCACGATTTGGTTTTGATAAAGCTGACAGGAAACGCCTGTTCACTATGATTAATGATTTACCAACAATATTCGAGATTGTGACTGGAAGTGCAAAAAAACAGACTAAGGAAAAGTCATCCATTTCAAACCACTCCAGCAACAAATCAAAATCTGGTTCAAAAGGGCGAGGATCTGAATCAGGGAAGTATTCAAAGCAAACAAAGGACGAGGAGGAAGAGGTACCGGATGAAGAAGATGACGAGGAGCATGGGGAAACTTTGTGTGGGGCATGTGGAGAGAACTATGCGTCTGATGAGTTCTGGATTTGTTGTGACATATGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCAGCCAGAGCCGAGCACATCAAGCAGTATAAGTGCCCCTCATGCAGCAATAAGAGAGCACGGCCTTGA 756 0.4656 MDGGVNYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFFQQCDPEKDNLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFTMINDLPTIFEIVTGSAKKQTKEKSSISNHSSNKSKSGSKGRGSESGKYSKQTKDEEEEVPDEEDDEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0780 251 MobiDBLite consensus disorder prediction 145 170 - -
Gso13g0780 251 Pfam Alfin 11 138 IPR021998 GO:0006355|GO:0042393
Gso13g0780 251 PANTHER CPG BINDING PROTEIN 3 251 IPR045104 GO:0006355|GO:0042393
Gso13g0780 251 SUPERFAMILY FYVE/PHD zinc finger 187 248 IPR011011 -
Gso13g0780 251 SMART PHD_3 197 245 IPR001965 -
Gso13g0780 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 246 IPR013083 -
Gso13g0780 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Gso13g0780 251 CDD PHD_AL_plant 197 247 IPR044104 -
Gso13g0780 251 Pfam PHD-finger 198 247 IPR019787 -
Gso13g0780 251 MobiDBLite consensus disorder prediction 145 193 - -
Gso13g0780 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Gso13g0780 251 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 3 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0780 Gso-Chr13 22147377 22151005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0780 1 250 Alfin-like Transcription Factor Family AT3G42790 74.104 3.66e-124 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gso13g0780 Alfin 2.2e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0780 - - gmx:100500110 478.789