Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0773 ATGAAGAAAGGAAACTTGGGACTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCAGGTTCCTGACTGAAAGTGGGACTTTTAAGGATGGGGATCTGCTTGTCAACAGGGATGGAGTTCGAATTGTCTCTCAGAATGATGTCGAAGCTCCACCTCCAATCAAGCCTACAGACAACCAGTTAACTTTGGCAGACATAGATGTAATCAAAGTTGTTGGAAAGGGAAATGGAGGGGTAGTTCAATTGGTGCAACACAAATGGACTAGTCAGTTTTTTGCGTTGAAGGTAATTCAGATGAATATTGAGGAGTCTATGCGCAAGCAGATTGCACAAGAGCTGAAAATTAATCAACAAGCACAATGTCCTTATGTTGTTGTCTGCTACCAATCATTCTATGAAAACGGTGTCATATCAATCATCTTAGAGTACATGGATGGAGGTTCCTTAGCTGATCTGCTGAAGAAAGTTAAAACAATTCCAGAGGATTATCTTGCTGCCATCTGTAAGCAGGTGCTGAAGGGTTTAGTTTATCTCCACCACGAAAAGCATATTATCCACAGAGACTTAAAACCTTCTAATTTGTTAATAAATCATATTGGTGAAGTAAAGATTACTGACTTTGGTGTGAGTGCAATTATGGAAAGTACATCTGGTCAAGCAAATACTTTCATTGGAACCTACAACTATATGTCTCCAGAGAGAATCAATGGAAGCCAGCGAGGCTACAACTACAAAAGTGATATATGGAGTTTGGGACTAATATTACTTGAGTGTGCTTTGGGTCGGTTTCCATATGCACCGCCTGATCAAAGTGAAACATGGGAAAGCATTTTTGAGCTTATTGAAACCATTGTCGATAAACCTCCTCCTATCCCTCCTTCTGAACAATTTTCTACAGAATTTTGCTCATTTATCTCAGCATGTCTACAGAAAGACCCAAAGGATCGACTGTCAGCTCAGGAATTAATGGCACATCCTTTTGTCAACATGTATGATGACTTGGAGGTGGATCTTTCAGCTTACTTCTCAAATGCAGGATCTCCTCTTGCAACCTTATAA 1071 0.4006 MKKGNLGLGLKLSVPVSDQSNFARFLTESGTFKDGDLLVNRDGVRIVSQNDVEAPPPIKPTDNQLTLADIDVIKVVGKGNGGVVQLVQHKWTSQFFALKVIQMNIEESMRKQIAQELKINQQAQCPYVVVCYQSFYENGVISIILEYMDGGSLADLLKKVKTIPEDYLAAICKQVLKGLVYLHHEKHIIHRDLKPSNLLINHIGEVKITDFGVSAIMESTSGQANTFIGTYNYMSPERINGSQRGYNYKSDIWSLGLILLECALGRFPYAPPDQSETWESIFELIETIVDKPPPIPPSEQFSTEFCSFISACLQKDPKDRLSAQELMAHPFVNMYDDLEVDLSAYFSNAGSPLATL* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0773 356 ProSiteProfiles Protein kinase domain profile. 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0773 356 CDD PKc_MAPKK_plant_like 85 336 - -
Gso13g0773 356 PANTHER MAP KINASE KINASE 1 356 - -
Gso13g0773 356 SUPERFAMILY Protein kinase-like (PK-like) 64 339 IPR011009 -
Gso13g0773 356 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Gso13g0773 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Gso13g0773 356 Gene3D Phosphorylase Kinase; domain 1 47 149 - -
Gso13g0773 356 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 1 356 - -
Gso13g0773 356 SMART serkin_6 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0773 356 Pfam Protein kinase domain 72 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0773 356 Gene3D Transferase(Phosphotransferase) domain 1 150 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0773 Gso-Chr13 22063631 22068620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0773 1 327 MAP Kinase Kinase Gene Family AT4G29810 67.560 6.23e-172 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Gso13g0773 Pkinase 3.5e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0773 K20603 - gmx:100789734 697.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0773 13 22063631 22068620 Gso17g0438 17 3972443 3977535 GST
Gso13g0773 13 22063631 22068620 Gso15g1423 15 15838870 15844553 PCT
Gso15g1423 15 15838870 15844553 Gso13g0773 13 22063631 22068620 PCT