Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0767 ATGTGCGGCGACGCCACGAACTGGGACGAAGACGCATACAGAGAAACCGTAGTCAGGGAGAGGGAAATCCAAACCCGAACCGTTTTCCGAACCGCTTGGGCCCCACCCTACACCTCTAACCTCGACACTCTCCTTGTCGCCTCTAGCGACGGTTCCGTCGCATCCTACTCCATCTCTTCCTCCGTCGCCGCCTCTAAGCTCAAAAATCCATTCGGTTTTGTCAATGCCGATACAGATGAGTTATTGGCTGAACCAAATTGCTTCGTTCAAGCGCACGCTGGACCTGCTTACGATGTCAAGTTTTATGGTGACGGCGAAGATGCTCTGTTGCTGAGCTGTGGTGATGATGGTCAGATTCGAGGATGGAGATGGAAGGAATTTTCAAGCTCAAATTATTCTGTTTCTTCCCAAGGAAATGATATCAAGCCTGTACTTGATGTGGTGAATCCTCAACACAAAGGTCCTTGGGGTGCACTTTCACCCGTCCCAGAGAATAATGCTATTGCTGTCAATACTCAGGGGGGATCTGTTTTTGCCGCATCTGGTGATTCTTGTGCATATTGTTGGGATGTGGAAACTGGTAAAGTGAAAATGGTATTCAAGGGGCACATGGACTATTTGCATTGTATAGTTGCTCGCAACTCATCAAATCAGATCATAACAGGTTCGGAGGATGGGACAACACGAATTTGGGATTGCAAAAGTGGAAAGTGTACGCAAGTGATTGATCCAGCAAGAGATTTGAAATTAAAGGGATCTGCTTCATGGGTTGGTTGTGTTGCTTTAGATGCAAGTGAGAGCTGGTTGGCTTGCAGTAGTGGACGTAATATATCACTTTGGAACCTTCCTGCTTCAGAATGCGTATCAAAGATTCCAACTCGTGCTTGTGTACAAGACATGTCATTTGACAATAATCAAATTTTGACAGTTGGTACAGATCCTCTACTCAATCGCTTTGACATGAATGGCACTATCCTTTCACAAATACAGTGTGCTCCTTCGTCATCTTTTTCTATCTCCTTACATCCTGCAGGGGTTATGGCAGTTGGAGGTTATGGATGTCTTGTTGATGTTATCTCACAATTTGGCAGCCACATGTGCACATTTCGTTGCCAGTGTAAACCCAATGGAAAGGTAGGATCAAATGTTTCGCGGGAGTTTGACCGTGGGCGTAGACCGGTCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATGATTCTAAAATGAGTGACTTACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGATAGTTTTGACGCTATGGGTTTGCAGGAAAATCTTCTCAGGGGAATTTACGCATATGGTTTTGAGAAGCCATCTGCCATTCAGCAAAGGGGGATAGTTCCCTTCTGCAAGGGACTTGATGTTATTCAGCAGGCTCAGTCTGGAACTGGGAAGACGGCTACTTTCTGCTCTGGTATTCTGCAGCAACTTGACTATAGCTTGACGCAATGCCAGGCCTTGGTTTTAGCACCAACTCGTGAGCTTGCTCAGCAGATTGAGAAGGTTATGCGAGCACTTGGAGATTATCTAGGTGTGAAGGTTCATGCTTGTGTGGGAGGTACCAGTGTGCGTGAAGACCAACGCATTCTATCTAGCGGTGTTCATGTTGTGGTTGGTACCCCTGGTCGTGTGTTTGATATGCTGCGCAGACAGTCACTTCTGCCAGATCACATCAAGATGTTTGTATTGGATGAGGCTGATGAAATGCTTTCCCGAGGTTTTAAGGATCAGATCTACGATATATTTCAGCTGCTGCCATCTAAGATTCAAGTGGGAGTTTTCTCTGCTACAATGCCTCCTGAGGCCCTTGAGATCACTAGGAAGTTTATGAACAAACCTGTTAGGATCCTTGTGAAGCGTGATGAGCTCACCTTGGAGGGTATTAAGCAATTTTATGTCAATGTTGAGAGGGAGGATTGGAAGCTGGACACACTCTGCGATCTTTACGAGACATTAGCTATCACTCAGAGTGTCATTTTTGTTAATACCAGAAGGAAAGTTGATTGGTTGACTGACAAGATGAGAAGCCGTGACCACACAGTCTCAGCAACCCACGGAGACATGGACCAGAATACCAGGGACATTATTATGCGTGAATTCCGTTCTGGGTCTTCCCGTGTCTTGATAACCACTGATCTTTTGGCTCGTGGTATTGATGTGCAACAAGTGTCTCTAGTTATAAACTTTGATCTCCCTACACAGCCTGAGAACTATCTCCACCGTATTGGTCGTAGTGGGAGGTTCGGAAGGAAAGGTGTTGCGATCAATTTTGTCACAAAGGATGACGAGAAAATGCTGTTTGACATCCAGAAGTTTTACAACGTGCAAGTTGAGGAGCTGCCTTCAAATGTTGCTGAGCTCCTTTGA 2424 0.4579 MCGDATNWDEDAYRETVVREREIQTRTVFRTAWAPPYTSNLDTLLVASSDGSVASYSISSSVAASKLKNPFGFVNADTDELLAEPNCFVQAHAGPAYDVKFYGDGEDALLLSCGDDGQIRGWRWKEFSSSNYSVSSQGNDIKPVLDVVNPQHKGPWGALSPVPENNAIAVNTQGGSVFAASGDSCAYCWDVETGKVKMVFKGHMDYLHCIVARNSSNQIITGSEDGTTRIWDCKSGKCTQVIDPARDLKLKGSASWVGCVALDASESWLACSSGRNISLWNLPASECVSKIPTRACVQDMSFDNNQILTVGTDPLLNRFDMNGTILSQIQCAPSSSFSISLHPAGVMAVGGYGCLVDVISQFGSHMCTFRCQCKPNGKVGSNVSREFDRGRRPVMAGLAPEGSQFDARQYDSKMSDLLSSDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLTQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLLPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDEKMLFDIQKFYNVQVEELPSNVAELL* 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0767 807 PANTHER RNA HELICASE 417 807 - -
Gso13g0767 807 Pfam WD domain, G-beta repeat 196 232 IPR001680 GO:0005515
Gso13g0767 807 Pfam WD domain, G-beta repeat 250 281 IPR001680 GO:0005515
Gso13g0767 807 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 503 788 IPR027417 -
Gso13g0767 807 ProSiteProfiles Trp-Asp (WD) repeats profile. 200 241 IPR001680 GO:0005515
Gso13g0767 807 SMART WD40_4 284 320 IPR001680 GO:0005515
Gso13g0767 807 SMART WD40_4 82 123 IPR001680 GO:0005515
Gso13g0767 807 SMART WD40_4 193 232 IPR001680 GO:0005515
Gso13g0767 807 SMART WD40_4 243 281 IPR001680 GO:0005515
Gso13g0767 807 SMART WD40_4 152 190 IPR001680 GO:0005515
Gso13g0767 807 SMART WD40_4 14 57 IPR001680 GO:0005515
Gso13g0767 807 SMART WD40_4 322 360 IPR001680 GO:0005515
Gso13g0767 807 Gene3D - 424 642 IPR027417 -
Gso13g0767 807 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 200 232 - -
Gso13g0767 807 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 646 807 IPR001650 -
Gso13g0767 807 SUPERFAMILY WD40 repeat-like 33 362 IPR036322 GO:0005515
Gso13g0767 807 SMART ultradead3 453 650 IPR014001 -
Gso13g0767 807 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 417 807 - -
Gso13g0767 807 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 434 462 IPR014014 GO:0003724
Gso13g0767 807 Pfam DEAD/DEAH box helicase 459 620 IPR011545 GO:0003676|GO:0005524
Gso13g0767 807 CDD DEADc_EIF4A 438 636 - -
Gso13g0767 807 CDD SF2_C_DEAD 647 777 - -
Gso13g0767 807 Gene3D - 8 142 IPR015943 GO:0005515
Gso13g0767 807 Pfam Helicase conserved C-terminal domain 660 768 IPR001650 -
Gso13g0767 807 Gene3D - 643 807 IPR027417 -
Gso13g0767 807 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 465 635 IPR014001 -
Gso13g0767 807 SMART helicmild6 687 768 IPR001650 -
Gso13g0767 807 Gene3D - 151 388 IPR015943 GO:0005515
Gso13g0767 807 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 581 589 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0767 Gso-Chr13 21997537 22009305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0767 395 807 Eukaryotic Initiation Factors Gene Family AT1G72730 88.164 0.0 761
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0767 K03257 - jre:109009115 1335.09