Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0763 ATGGGAGAAGAAGAAGTAACAAGAGTGAAAGCAGAGTTGTTCCAAGACAGCGAAGGAGATCCCCACGACGACGTTTTGAGCGAAAGCAAGGACTCGGGAGTGACGACGGAAGAAGTTACGATGACGACTCACGTAGTTAAAGAAGAGATAGATGACGGCGCCGTTAACGGGTCGTCGTCGCCGAAACCGATGGAAGGGTTGCACGAGGTGGGTCCCCCACCGTTCCTGAAGAAGACGTTCGAAATGGTGGAGGACCCTCACACCGACCCCATTGTGTCGTGGAGCCAAACTCGCGACAGTTTCATCGTTTGGGACTCTCACGAATTCTCCAAATCACTTCTCCCTAAGTACTTCAAGCACAGTAATTTCTCCAGCTTCGTTCGCCAGCTCAACACCTATGGCTTTAGGAAGGTTGATTCGGACCGTTGGGAGTTTGCGAATGAAGGATTCCAAGGAGGGAAGAAGCATTTGCTGAAGAACATAAGGAGGAGGTGTAAGTACAACAAGCTGCATCAGGGAGCATTCAATATGATGAAGCCATGTGTGGATTCTGAAGTGGAGAAGCTGAAGAAGGACCAGAACATTTTGAAGGTGGAGATTCTGAAGCTGAGGCAGCAGCAGGAGAATTCGCATGTTCAGCTCACAAATGTTCAGGAGAGAATTCGGTGTGCAGAGGTAAAACAGTATCAGATGATGTATTTCCTCACCAGAATGGCTAGAAGGCCTGCGTTTGTTGAGCAGTTAGTCCATAAGATTAGGCGAAAAAGAGAGATTGATGGTAATGAAATGGTTAAGAGGCCTAGATTGATGGGAACCCCGTGCCATGTACCCTTCCCCAAGACCATGGAAACAACACCTGATTTTGATCATAGACACCAACAAGGTCATAAACAATTTGCTACATTGCAATCTGAACTCAATGGACTTCTGTCTGAAACTGTGAACACTGGTAGGATGGAGCACCCAACTCCATCTCCTTTGGAAGATGAATTATGCAGCTCTTTGCAAGGGTTAAGGGCTCATGGTATTTCTAGAGCAAGTGCGCAAGATGCATCTTCTTCTGCCTATCATGTTATGTCAGAAAAACTAATGAGAGAAAATTCTATAGTTGATGAAGAACTAGATGTGAATGACTCAAATATCTATCTCGAATTAGAGGATTTGATTACTAAGCCAACAGATTGGTCTGTTGGATCTGCAAGTGGATTGGTGGAACAAACCAGTTGA 1227 0.4572 MGEEEVTRVKAELFQDSEGDPHDDVLSESKDSGVTTEEVTMTTHVVKEEIDDGAVNGSSSPKPMEGLHEVGPPPFLKKTFEMVEDPHTDPIVSWSQTRDSFIVWDSHEFSKSLLPKYFKHSNFSSFVRQLNTYGFRKVDSDRWEFANEGFQGGKKHLLKNIRRRCKYNKLHQGAFNMMKPCVDSEVEKLKKDQNILKVEILKLRQQQENSHVQLTNVQERIRCAEVKQYQMMYFLTRMARRPAFVEQLVHKIRRKREIDGNEMVKRPRLMGTPCHVPFPKTMETTPDFDHRHQQGHKQFATLQSELNGLLSETVNTGRMEHPTPSPLEDELCSSLQGLRAHGISRASAQDASSSAYHVMSEKLMRENSIVDEELDVNDSNIYLELEDLITKPTDWSVGSASGLVEQTS* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0763 408 Pfam HSF-type DNA-binding 75 164 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso13g0763 408 MobiDBLite consensus disorder prediction 1 41 - -
Gso13g0763 408 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 49 392 IPR027725 -
Gso13g0763 408 SUPERFAMILY "Winged helix" DNA-binding domain 71 164 IPR036390 -
Gso13g0763 408 Coils Coil 186 206 - -
Gso13g0763 408 MobiDBLite consensus disorder prediction 1 31 - -
Gso13g0763 408 PRINTS Heat shock factor (HSF) domain signature 75 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso13g0763 408 PRINTS Heat shock factor (HSF) domain signature 113 125 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso13g0763 408 PRINTS Heat shock factor (HSF) domain signature 126 138 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso13g0763 408 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-9 49 392 - -
Gso13g0763 408 SMART hsfneu3 71 164 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso13g0763 408 ProSitePatterns HSF-type DNA-binding domain signature. 114 138 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso13g0763 408 Gene3D - 68 165 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0763 Gso-Chr13 21962307 21964645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0763 61 406 HSF AT2G26150 40.563 1.09e-81 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gso13g0763 HSF_DNA-bind 5.7e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0763 K09419 - gmx:100818430 814.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0763 13 21962307 21964645 Gso17g0451 17 4088329 4090713 GST