Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0761 ATGGATGGCGTCTTCACCCTCCCTAAAGCCGCCAGAGCTGATTTTTTTCGCTCTCTGGTGCAATCTTTTGGCTGCACTTACGTTTGTCTGTGGCAATATGACTCCAATTTATCAAATTTGTTCTTCTTTGATGGTTACTGCGATGTAACGAACAACCAACCAAGCTCTTATTTAGGGAGTGTAGCTGAAAGGCTTTTTCACCAATATCGGGCTTTAACGTTTGATGTCAATCACGAATGTGTACCTGGAGTCGCTTTCAGGAATCAGCTTCCCTACATTGAGCTGCAACTATTGGATCTTCTAAGACTGACTTCGACAGAAATACAAACACAATTCTTTCAAGAAGCAAGGATTGAGATTGCTGTTTTCATGGGGTGCAAAAACGGAGAAATTGAGCTTGGGTTCTCCAACATTTCTCAAGTAATTAAGAAAACTATACTACCTTCATCATCATTTTGCTTCATGTCATTATCCACGGGTAGCCCTGATCAATGTTCATCATCACTATTACTCAGTAGTATTCCGGGTACTTCCCAGTTCCATTTTCCTCAAACCCTTCCCACACAAACACACCAACAACAAAGCATCCAAGAAATAGATTTAGCTCCTGTCATTCCAAGTTATTTTCCCACACCAGATGGTGAACATGAAGCAATAGTAAGAGCACTTATGAGTGTTATGTCTCCACTTTCTTCTTCTTCTTCAACTTCTCAGCAGCATCAACCCCGCCAAATTTTGCCTAATTATACTTCAATAGTACATCCAGGAGCCACCGCTTTCAATACATATAGACCAGATACAATGAACCCTAATATAACACCCTACATGGGATCCAATTTTCGCAGGCAAAGCCCACAGAATAGATCATTTGCATTCTTTACAAACTTAAATTTGATGAGAATGAGAGAACTCGTTAGTCAACCTGCATCCCGTCCCATTAGTACCCAACACCAGCAGCATCATATGATAACAGAGCGAAGAAGGCGCGAAAAACTCAATGAGAGTTTTCAGGCACTTAGAGCTCTTCTTCCTCCAGGAACTAAGAAAGCCAAAGGGACGATCCTTACAACAGCAAAGGATACAATGAGATCATTGATGGATGAAATTGAAAAGATTAACTTGAGAAATCAGCAGCTGATGGCAGTTTTATCAGCAAAAGAAACTACAGTGTCAGCTACTAGTACTAAAGAAAACAAAGCTAAACCTAGCAGTAGCTCCTCAAATGAAAGATTGAATGTTCTTGTTTCGGCCGTGTTGGAATCGAGTTCATTATCAGAAGAGCGAATGGTGGACGTGCAAGTGACACTGAGAGGAGAAAGTTCTCGAGTTGATGTATTGATTCGGCTATTGGAATTCTTAGAAAGGGTTCAGAACGTAAACTTGGTTTCCATGTACGCAAACAACCATATTATAGGAGGGACAACCATTAACCAATTAACCTTCAGACTGAGGATTATTGAGGGCAATGAATGGGACGAGCATGCCTTGGAGGAAGCAGTTAGAAGAGTGGTTGCTGACACAATACAGTGGAAACCACTGGACCAATAA 1548 0.4115 MDGVFTLPKAARADFFRSLVQSFGCTYVCLWQYDSNLSNLFFFDGYCDVTNNQPSSYLGSVAERLFHQYRALTFDVNHECVPGVAFRNQLPYIELQLLDLLRLTSTEIQTQFFQEARIEIAVFMGCKNGEIELGFSNISQVIKKTILPSSSFCFMSLSTGSPDQCSSSLLLSSIPGTSQFHFPQTLPTQTHQQQSIQEIDLAPVIPSYFPTPDGEHEAIVRALMSVMSPLSSSSSTSQQHQPRQILPNYTSIVHPGATAFNTYRPDTMNPNITPYMGSNFRRQSPQNRSFAFFTNLNLMRMRELVSQPASRPISTQHQQHHMITERRRREKLNESFQALRALLPPGTKKAKGTILTTAKDTMRSLMDEIEKINLRNQQLMAVLSAKETTVSATSTKENKAKPSSSSSNERLNVLVSAVLESSSLSEERMVDVQVTLRGESSRVDVLIRLLEFLERVQNVNLVSMYANNHIIGGTTINQLTFRLRIIEGNEWDEHALEEAVRRVVADTIQWKPLDQ* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0761 515 Pfam Helix-loop-helix DNA-binding domain 319 365 IPR011598 GO:0046983
Gso13g0761 515 SMART finulus 322 371 IPR011598 GO:0046983
Gso13g0761 515 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 316 365 IPR011598 GO:0046983
Gso13g0761 515 Coils Coil 355 382 - -
Gso13g0761 515 CDD bHLH_AtbHLH_like 321 371 IPR045239 -
Gso13g0761 515 Gene3D - 314 390 IPR036638 GO:0046983
Gso13g0761 515 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 1 507 IPR044658 -
Gso13g0761 515 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 316 385 IPR036638 GO:0046983
Gso13g0761 515 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 1 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0761 Gso-Chr13 21929103 21933004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0761 1 506 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 36.984 1.23e-73 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso13g0761 HLH 6.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0761 - - gmx:102667064 952.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0761 13 21929103 21933004 Gso17g0454 17 4109508 4113085 GST
Gso13g0761 13 21929103 21933004 Gso15g1406 15 15511136 15516599 PCT
Gso13g0761 13 21929103 21933004 Gso9g0541 9 6118974 6124382 PCT
Gso15g1406 15 15511136 15516599 Gso13g0761 13 21929103 21933004 PCT
Gso9g0541 9 6118974 6124382 Gso13g0761 13 21929103 21933004 PCT