Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0754 ATGGCCCCCAGAATCCTACTATGCGGCGACGTTTTAGGCCGCCTGAATCAGCTTTTCAAGCGCGTCTCATCGGTGAACAAATCTGCAGGTCCATTCGACGCCCTCTTGTGCGTGGGTCAGTTCTTCCCTGACTCACCGGAGCAGCTCGAGGACTTCACGAAATACATCGAAGGTGGGTCCCACTTTCCTCTCCCGACCTACTTCGTCGGCGACTACGGCGTCGCCGCCCCCAAACTTCTCCTGCAAGCTTCCAAGGACTCCGCCAACCAAGGCTTCAAGATGGATGGCTTCAAGGTTTGCCACAACTTGTACTGGCTGAAAGGCAGTGGCAAATTCTCCCTCTTCGGGTTATCCGTGGCCTATTTATCTGGTAGGAAGTCTTCCAGTGCTCAACAGTTTGGAACTTACACTGAAGACGATGTTGATGCATTGCGAGCAATTGCCGAGGAACCTGGAATTGTTGATTTGTTCTTGACTAATGAATGGCCGAGTGGGGTCACCAATAGAGCAGCTGATTCGGACATTCCTGCCGGACTCTCTGATGCTGCAGGCGGTGATTCAACCGTATCGGAGTTAGTACAAGAGATCAAACCACGTTATCACATTGCAGGCACTAAAGGTATATACTATGCCCGCGAACCATATTCCAATGTTGATGCTGTGCATGTCACTCGTTTCATAGGGCTTGCGTCTGTTGGAAATAAAGATAAGCAGAAATTTATTCATGCAATCTCCCCCACACCTGCATCCACCATGTCTTCAACTGAGATTGCCATGAAAACCACAAATACCACCTTATCACCATACACATATGAGGAGAAAAGAACTTCTCCAATGGATTCAACAAAAAGATCCAGTGATTCTATCTCTGATCCTCAATATTGGAGATATGATGTTTCTCAAAAGCGACAAAAACATGAAGCTGGACACGGTGATAAATTGTGTTTCAAATTTGTTTCTTCTGGTTCTTGTCCACGAGGAGAGAAGTGCAATTTTCGACATGATACAGATGCAAGGGAGCAGTGTATGAGAGGTGTTTGTTTTGATTTTTTGAACAAGGGAAAATGTGAAAGGGGTCCAGATTGCAACTTTAAGCACAGCTTGCAGGATGAGGGTGGTAGGCTTCCTTCTAGGAGGCCTGGATCTGGCAGGTCAAAGGAATGTTGGTTTTGCTTGTCAAGCCCAAATGTGGAGTCACATTTAATCATAAGCATTGGGGAAAATTACTACTTGGCACTGGCTAAAGGTCCACTTGTTGAAGACCATGTACTGATTATACCAGTCGAGCATATGCCTAGTACCTTATCCATGTCTTCTGAATCTGAAATAGAGCTCTCTAGGTTTCAGAACAGTCTCAAGAGTTACTGCAAGAGCCAAGAGAAGGAAGTCATCTTTTTTGAGTGGGTCTCCGTACGTGGCACTCATGCCAATCTTCAGGCCATTCCCATTCCATCTTCCAAAGCAATTATGGCCGAGAAAATTTTCAATTTAGCTGCACAGAAGTTGCGATTTGAATTTGTGACTAAGAAATTTGATAGCATTTCTGATGGAAGGAAGTTTTTGAAGGCGCAAATTGATGGGGATTCAAGCTTGTTCTATGCTCAAATCCCAGGAGGCACAATTCTGCTGCATCATGTTGAAGAGAAAGAGAAATTTCCTGCCCAATTTGGTCGTGAGGTTCTGGCTGGGTTGCTTAATATGGCAGATAATGCTGATTGGAGGAATCGCAAACATAGCAAAGATGAAGAAATGAAAATTGTTGAAGTTTTCAAGAGCCGATTTCAAGAATATGATCCAAACTGTTAG 1806 0.4491 MAPRILLCGDVLGRLNQLFKRVSSVNKSAGPFDALLCVGQFFPDSPEQLEDFTKYIEGGSHFPLPTYFVGDYGVAAPKLLLQASKDSANQGFKMDGFKVCHNLYWLKGSGKFSLFGLSVAYLSGRKSSSAQQFGTYTEDDVDALRAIAEEPGIVDLFLTNEWPSGVTNRAADSDIPAGLSDAAGGDSTVSELVQEIKPRYHIAGTKGIYYAREPYSNVDAVHVTRFIGLASVGNKDKQKFIHAISPTPASTMSSTEIAMKTTNTTLSPYTYEEKRTSPMDSTKRSSDSISDPQYWRYDVSQKRQKHEAGHGDKLCFKFVSSGSCPRGEKCNFRHDTDAREQCMRGVCFDFLNKGKCERGPDCNFKHSLQDEGGRLPSRRPGSGRSKECWFCLSSPNVESHLIISIGENYYLALAKGPLVEDHVLIIPVEHMPSTLSMSSESEIELSRFQNSLKSYCKSQEKEVIFFEWVSVRGTHANLQAIPIPSSKAIMAEKIFNLAAQKLRFEFVTKKFDSISDGRKFLKAQIDGDSSLFYAQIPGGTILLHHVEEKEKFPAQFGREVLAGLLNMADNADWRNRKHSKDEEMKIVEVFKSRFQEYDPNC* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0754 601 Gene3D - 381 505 IPR036265 -
Gso13g0754 601 SUPERFAMILY CCCH zinc finger 312 338 IPR036855 GO:0046872
Gso13g0754 601 MobiDBLite consensus disorder prediction 270 289 - -
Gso13g0754 601 ProSiteProfiles Zinc finger C3H1-type profile. 346 369 IPR000571 GO:0046872
Gso13g0754 601 CDD MPP_CWF19_N 6 232 - -
Gso13g0754 601 Pfam Protein similar to CwfJ C-terminus 1 384 495 IPR006768 -
Gso13g0754 601 Gene3D - 298 370 - -
Gso13g0754 601 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 1 600 IPR040194 -
Gso13g0754 601 SMART c3hfinal6 311 336 IPR000571 GO:0046872
Gso13g0754 601 SMART c3hfinal6 343 368 IPR000571 GO:0046872
Gso13g0754 601 PANTHER CWF19-LIKE PROTEIN 1 1 600 - -
Gso13g0754 601 SUPERFAMILY HIT-like 386 457 IPR036265 -
Gso13g0754 601 Pfam Protein similar to CwfJ C-terminus 2 509 598 IPR006767 -
Gso13g0754 601 ProSiteProfiles Zinc finger C3H1-type profile. 314 337 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0754 Gso-Chr13 21848583 21853183 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso13g0754 CwfJ_C_1 1e-37 CL0265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0754 K24939 - gmx:100782106 1200.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0754 13 21848583 21853183 Gso17g0460 17 4164171 4168795 GST