Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0753 ATGGGGGTGGTTTTGGCCTTGATGCTGCAGCTCTGCATCATTGCCTTTGCTGTGACAGCTCAAGAGTTCAAAGCATTTCTTCCAGTCGTTCCTCCTGGTGAAGAAACACTTGGTCCTATTTATCATGGAGAGGGAAGCAAAGCACCAAACCTGCCATCAGATGGAGATGGGTTTGTTATATCCCCATCTCCGGCTAACTTACATGTGTATCATTCCCCTAGCTCTCCAGCAGTACCAAATGGACCATTCTATAAGCCTCCAAAGACATTTCCACCTTCTACAACAGCTCCATCCCCTCAGAAGATTAAAGACATTGAACCATCCAAATCTCCAAGTCCGAGCACCATAGCATTATCACCACCATATGCGGTTGTTCCCTTGCCATCAGCAGTTCAAGGGAACAAGCCACCACCTGTTAAAACAAGTCCACCTCAAAGGGAAGCGCCTACTGTTAGGCCTCCTTTCTCTACACCAACTGCTCCAGCTCCAGTTGCAATATCTTCTGACAGATCACCAAAAATTTCACCAGTCAGCCAACCAATTGAACATGGACATTTGACACCTGATGTGGATAATAGGAATGCAAATAACAGTCACCTTGCAGAGTCATTTTCACCAGCACCAGGTGCAGTACCTTCTGCTAATTTGCCCAAAAATTCATCAGCCAGCCAACCAACTGAAAATGGAACTTTTCCTCCCAAAGAGGGTACAAATAATGGTCATGGCCTGGAACCAATTTCACCAGCCCCTGTAGCAGTTAATTTGCCAAAAGAGTCACCAGTCAGCCAGCCTCCTGAACATGCAAGTTTGCCGCCAATTGTCCATCAAAGGAATGCAAATATGGGTCACAACTTGAAGCCTGTTTCACCAGCCTCAGTTGCTATACCTCCCACAACTTACAAAATAACATCAATGGACAGTGAACCAACGACACAGCATGGAAGCATTCCACCTAATGTTCATAAAAGAAATTCAAATAAAGGTCACACTTCTGAGACAGTTTCACCAGAACCTGTTGCATCCCCACCATGGAAAGTGGAAAATAGCCCACCAGAGACCCACCCAATTGTCCCAACAATAACTCCATCCACATTAACTGCACCAGTTACATCACCTCCAAGTGCATTTCCATTAAAACCACCATTGGTCCATCCGATTGTTCCAGTAGCATCTCCATCAAAATTACCAGCACCTGTTTCCTCTCCCACTCCTTTGAGAAGCTTCAATTGGAAGAAGGGTGGAGCACCAGTTGTTGCACCTTTGTCCAGAAATCCAAAGCCACTTCCAGCTGTAATACACTCCCCAGCTCAAGCTCCTGTAGCACAAAAAGCAAGGCAATTACATCATGCCCCTGAGCCATTGATTTCATCTCCTAAATCTTCTTCCAATAAAGAATATCATTATCCTCCATTGTCACCTACATCCTCATTTTATAAACATCCTCATACAAGGGAGATAATTGGCAGCCCTTCTCCTGCATCATCATCTATGGTTTCTCCTCCCACTTCAAAACACCAAGAAGCAGCAATTCCTCCCTTATTGCCACCAAGAAGTGGACAAAGACATCATGTTTCACCACCAATCAACTCAAGTTCTTCAGTTTCCCCATTCTCTTCCCCTATTCATTCAAATACGGGTCAAGTTTCACCTGCTCCTTCTCCATCAATCAAATTTGCATCTCACCCAACTGGAAGCACCATTTTTCCTCCTAAAGTAGCTCCATCTGAGTCTTCTTCAAAGAGACCTAAGATGCCACTCTTGCCTCAAGTTCAAGTGCTGCCACCGCCGCCTCCTAATGAAGATTGTATATCAACTGTCTGCACAGAACCTTATACAAATTCTCCGCCTGGAGAACCTTGCAGATGTGTCTGGCCGATGCGTGTTGGTCTTCGCCTTAGTGTTTCTCTTTATACCTTCTTCCCTTTGGTTTCAGAACTAGCTTCTGAAATTTCCACTGGGGTTTTCATGAAACAAAGTCAAGTTCGCATTATGGGAGCAAATGCAGCAGACCAACAACCTGAGAAAACTGTTGTCCTTATTGATTTGGTGCCACTTGGGGAAGAGTTTGATAATACTACAGCCTTTTTTACTTCTGACAGATTCTGGCACAAAATGGTTATTATAAAAGCTTTCTACTTTGGAGACTATGACGTGTTATATGTGAGTTATCCAGGTTTACCTCCTTCTCCTCCTTTACCTCCTTCAAGCCTTAACATGTTCAATGGAGGTCCATATTCCACTGATGGCAATAATGGAAGGACGATAAAGCCCATTGGGGTCGACATACTGAAGAGACAGCAAAAAGTTGGACTTAGCAGAGGCATAATTTCCACTATTGCTGTTTCTGTTTCTTTAGCAGTTGTTTTATGTGCTGCTGCTGCCTGGGTCATGTTCAAGTTCAGAGATCATGTTAGTCAGTCAGCATCAACCCCACGGCAGCTTTCACCACCTTCTCTTACCAAAGAACCAGGTACTGCAGGATCACTTAGAGGTGCGGGTGCAGGAGTTGGTTCTGTTTCCACATCATTTCGATCTAGCATTGCTGCTTATACAGGATCTGCTAAGACTTTCAGTACTAATGACATCAAGAAAGCTACTGATGATTTCCATGCTTCAAGAATACTTGGAGAGGGCGGTTTTGGCCTTGTTTACAGTGGTATCCTTGAAGATGGGACCAAAGTGGCAGTCAAGGTTCTAAAGAGGGAGGACCATCATGGTGATCGTGAATTCTTAGCTGAAGTTGAGATGCTTAGTCGTCTTCACCATAGAAATTTGGTCAAGTTAATTGGTATATGTATTGAAAACAGCTTCCGCAGCCTTGTTTATGAACTTGTTCCAAATGGAAGCGTGGAATCCTATTTACATGGGGTTGACAGGGGAAACAGCCCACTTGATTGGGGTGCCCGGATGAAGATAGCACTTGGTGCAGCTCGTGGCCTAGCTTACCTGCATGAAGATTCAAGTCCCCGTGTTATACATAGGGACTTCAAGTCTAGCAACATATTGTTGGAAGATGATTTTACACCAAAAGTATCTGATTTTGGACTGGCCCGAACAGCAACGGATGAGGAAAACAAGCACATATCAACACGTGTCATGGGAACTTTTGGTTATGTGGCGCCGGAGTATGCAATGACTGGGCATCTTCTTGTTAAGAGTGATGTTTACAGCTATGGTGTTGTTCTTCTTGAGCTTTTGACTGGAAGAAAACCTGTAGACATGTCACAAGCTCCTGGTCAAGAGAATCTTGTCGCTTGGGCTCGTCCACTTCTCACAAGTAAAGAAGGATGTGAAGCAATGATAGACCAATCTCTAGGCACTGATGTGCCCTTTGACAGTGTAGCTAAAGTTGCAGCCATTGCTTCAATGTGTGTGCAACCAGAGGTATCAAACCGTCCTTTCATGAGTGAGGTTGTGCAGGCTTTAAAACTTGTATGTAGTGAATGTGATGAAGCAAAAGAAGAATCAGGTTCAAGCAGTTTTAGCCTGGAGGATTTATCTGTTGATTTAGCTCTAGGAATAAGCACTGTTTCTGGTCAGCTATCAGATAATTTCCAAAGCCAATTATCAGGTACTAACTTTGATTCTGGAGTTGATATTGAAAGAGGCTTGGCAGCATCAGAAATTTTCAGTTCATCAGCAAGATTTGGCAGGGCGGAGTCTGGATCATTTAGAAGAAACTCTTATTCAGGTCCGCTGAGAACCGGAAGAAGCCGGCAGTTGTGGCAGATAATTAGGAGTCTTTCTAGTGGCAGTGTCAGTGAACACGGAACTATGTTAAAGTTATGA 3789 0.4407 MGVVLALMLQLCIIAFAVTAQEFKAFLPVVPPGEETLGPIYHGEGSKAPNLPSDGDGFVISPSPANLHVYHSPSSPAVPNGPFYKPPKTFPPSTTAPSPQKIKDIEPSKSPSPSTIALSPPYAVVPLPSAVQGNKPPPVKTSPPQREAPTVRPPFSTPTAPAPVAISSDRSPKISPVSQPIEHGHLTPDVDNRNANNSHLAESFSPAPGAVPSANLPKNSSASQPTENGTFPPKEGTNNGHGLEPISPAPVAVNLPKESPVSQPPEHASLPPIVHQRNANMGHNLKPVSPASVAIPPTTYKITSMDSEPTTQHGSIPPNVHKRNSNKGHTSETVSPEPVASPPWKVENSPPETHPIVPTITPSTLTAPVTSPPSAFPLKPPLVHPIVPVASPSKLPAPVSSPTPLRSFNWKKGGAPVVAPLSRNPKPLPAVIHSPAQAPVAQKARQLHHAPEPLISSPKSSSNKEYHYPPLSPTSSFYKHPHTREIIGSPSPASSSMVSPPTSKHQEAAIPPLLPPRSGQRHHVSPPINSSSSVSPFSSPIHSNTGQVSPAPSPSIKFASHPTGSTIFPPKVAPSESSSKRPKMPLLPQVQVLPPPPPNEDCISTVCTEPYTNSPPGEPCRCVWPMRVGLRLSVSLYTFFPLVSELASEISTGVFMKQSQVRIMGANAADQQPEKTVVLIDLVPLGEEFDNTTAFFTSDRFWHKMVIIKAFYFGDYDVLYVSYPGLPPSPPLPPSSLNMFNGGPYSTDGNNGRTIKPIGVDILKRQQKVGLSRGIISTIAVSVSLAVVLCAAAAWVMFKFRDHVSQSASTPRQLSPPSLTKEPGTAGSLRGAGAGVGSVSTSFRSSIAAYTGSAKTFSTNDIKKATDDFHASRILGEGGFGLVYSGILEDGTKVAVKVLKREDHHGDREFLAEVEMLSRLHHRNLVKLIGICIENSFRSLVYELVPNGSVESYLHGVDRGNSPLDWGARMKIALGAARGLAYLHEDSSPRVIHRDFKSSNILLEDDFTPKVSDFGLARTATDEENKHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQAPGQENLVAWARPLLTSKEGCEAMIDQSLGTDVPFDSVAKVAAIASMCVQPEVSNRPFMSEVVQALKLVCSECDEAKEESGSSSFSLEDLSVDLALGISTVSGQLSDNFQSQLSGTNFDSGVDIERGLAASEIFSSSARFGRAESGSFRRNSYSGPLRTGRSRQLWQIIRSLSSGSVSEHGTMLKL* 1263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0753 1262 Gene3D Phosphorylase Kinase; domain 1 840 944 - -
Gso13g0753 1262 MobiDBLite consensus disorder prediction 79 94 - -
Gso13g0753 1262 CDD STKc_IRAK 875 1143 - -
Gso13g0753 1262 MobiDBLite consensus disorder prediction 523 562 - -
Gso13g0753 1262 SUPERFAMILY Protein kinase-like (PK-like) 849 1142 IPR011009 -
Gso13g0753 1262 Gene3D Transferase(Phosphotransferase) domain 1 945 1165 - -
Gso13g0753 1262 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 415 1262 - -
Gso13g0753 1262 MobiDBLite consensus disorder prediction 455 470 - -
Gso13g0753 1262 MobiDBLite consensus disorder prediction 214 235 - -
Gso13g0753 1262 ProSitePatterns Protein kinases ATP-binding region signature. 875 897 IPR017441 GO:0005524
Gso13g0753 1262 MobiDBLite consensus disorder prediction 78 271 - -
Gso13g0753 1262 MobiDBLite consensus disorder prediction 808 833 - -
Gso13g0753 1262 Pfam Protein tyrosine and serine/threonine kinase 871 1142 IPR001245 GO:0004672|GO:0006468
Gso13g0753 1262 MobiDBLite consensus disorder prediction 488 503 - -
Gso13g0753 1262 PANTHER OS01G0750732 PROTEIN 415 1262 - -
Gso13g0753 1262 ProSitePatterns Serine/Threonine protein kinases active-site signature. 991 1003 IPR008271 GO:0004672|GO:0006468
Gso13g0753 1262 ProSiteProfiles Protein kinase domain profile. 869 1145 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0753 1262 MobiDBLite consensus disorder prediction 808 822 - -
Gso13g0753 1262 MobiDBLite consensus disorder prediction 131 160 - -
Gso13g0753 1262 MobiDBLite consensus disorder prediction 95 117 - -
Gso13g0753 1262 MobiDBLite consensus disorder prediction 301 337 - -
Gso13g0753 1262 MobiDBLite consensus disorder prediction 301 372 - -
Gso13g0753 1262 MobiDBLite consensus disorder prediction 395 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0753 Gso-Chr13 21836642 21846240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0753 323 1258 Receptor kinase-like Gene Family AT5G56890 55.324 0.0 884
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Gso13g0753 PK_Tyr_Ser-Thr 5.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0753 - - gmx:100816296 2418.65