Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0749 ATGATTCCAGCCTATCGCCACTCAGTATCTTCTGTTATGCCTCTGGATCTTAATGAAGATCAAAACCACGAGTTCTTCAGTCCAATTCATCACCCTTCCTCTTCGTTTTCTTCTCTATCTTCATCATATCCTATTCTCTTCAACCCGCCAAATCAAGATCAAGAAGCTCGATCATACTACTGGGAAACAACAAAGCACTTACCAAGTCATGAAGAAGAGGCTGAGAAGATTATCCCTACTAGTGGATCATGGGGTCACTCGGTGGAAGAAAGTGAGCATAAGGTGACAGTTTGGAGAAAAGAAGAGAGGAATGAAAATCTTGCTGAAGATGGTTCGGTGAAGTGGATGCCTTCGAAGATGAGAATTATGCGGAAGATGTTGGTGTCCAATCAAACTGATGCATACACTTCAGACAACAACACTACGCACAAGTTTGATGATCATAAACAACAACTGTCGTCACCGCTTGGAATTGATGATAACAGCAGCAACAACTATTCAGACAAAAGTAACAACAGTATTGTTAGGGTTTGTTCTGATTGCCACACCACCAAGACTCCTCTATGGAGGAGTGGACCAAGAGGCCCCAAGTCGCTTTGCAATGCCTGCGGAATTCGACAAAGGAAGGCAAGACGAGCCATGGCAGCTGCTGCGGCGGCAGCATTGGGAGATGGAGCAGTTATTGTGGAAGCTGAGAAATCTGTGAAGGGAAAGAAGTTGCAGAAGAAGAAAGAGAAGAAGACAAGAATTGAGGGTGCAGCTCAGATGAAAATGAAGCGGAAGCTTGGAGTTGGAGCAAAGGCATCACAAAGTAGAAACAAGTTTGGTTTTGAGGATTTGACATTGCGCTTGAGAAAGAACTTGGCTATGCATCAAGTTTTCCCTCAGGACGAGAAGGAGGCTGCGATCCTCCTCATGGCTTTATCTTATGGCCTTGTTCATTGA 945 0.4444 MIPAYRHSVSSVMPLDLNEDQNHEFFSPIHHPSSSFSSLSSSYPILFNPPNQDQEARSYYWETTKHLPSHEEEAEKIIPTSGSWGHSVEESEHKVTVWRKEERNENLAEDGSVKWMPSKMRIMRKMLVSNQTDAYTSDNNTTHKFDDHKQQLSSPLGIDDNSSNNYSDKSNNSIVRVCSDCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAAAALGDGAVIVEAEKSVKGKKLQKKKEKKTRIEGAAQMKMKRKLGVGAKASQSRNKFGFEDLTLRLRKNLAMHQVFPQDEKEAAILLMALSYGLVH* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0749 314 ProSiteProfiles GATA-type zinc finger domain profile. 172 208 IPR000679 GO:0006355|GO:0043565
Gso13g0749 314 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 1 314 - -
Gso13g0749 314 CDD ZnF_GATA 177 209 IPR000679 GO:0006355|GO:0043565
Gso13g0749 314 Gene3D - 168 261 IPR013088 GO:0006355|GO:0008270
Gso13g0749 314 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 314 - -
Gso13g0749 314 SMART GATA_3 172 223 IPR000679 GO:0006355|GO:0043565
Gso13g0749 314 ProSitePatterns GATA-type zinc finger domain. 178 203 IPR000679 GO:0006355|GO:0043565
Gso13g0749 314 MobiDBLite consensus disorder prediction 154 168 - -
Gso13g0749 314 MobiDBLite consensus disorder prediction 134 168 - -
Gso13g0749 314 Pfam GATA zinc finger 178 211 IPR000679 GO:0006355|GO:0043565
Gso13g0749 314 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 171 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0749 Gso-Chr13 21795058 21797172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0749 15 314 C2C2-Gata Transcription Factor Family AT5G56860 35.354 4.16e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso13g0749 GATA 3.4e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0749 - - gmx:100810090 543.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0749 13 21795058 21797172 Gso17g0465 17 4203904 4206080 GST
Gso13g0749 13 21795058 21797172 Gso15g1391 15 15157199 15159298 PCT
Gso13g0749 13 21795058 21797172 Gso9g0531 9 5911273 5913635 PCT
Gso15g1391 15 15157199 15159298 Gso13g0749 13 21795058 21797172 PCT
Gso9g0531 9 5911273 5913635 Gso13g0749 13 21795058 21797172 PCT