Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0742 ATGGAAGACAATAATGAAGAATGCATCACTGGGTTATGTTTGGGAATTGGAATGGGAGGGCATGTTCCAAAGAAGAATAAGCAGAAAGAGAACAAGGCTGTGGCTTGCCTAGACCTAGCGTTTGAGCTTTGTCCAAAAGGAGAAGAAGCCATTAACGTGAATCTTCATCATCATCATCATGAGAAGGTAGAAAGAATCAGCTTGGAGAGAATCCACGAGTACCCCAATGAAAAGAGCACTGATTCTGATAACAGCAACAACAACAACAGATGCAGAAAGAAACTGCGGCTTTCCAAGGAGCAATCATCCATGCTTGAGAACAGCTTCAAACAGCATAGCACTCTTAATCCGGTCCAGAAACAAGCACTAGCTGATCAATTGAATTTAAAGACTAGACAAGTTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACCAAACTGAAGCAGACAGAAGTGGACCACGAGTTGTTGAAAAAACACTGTCAAAATCTAAGTGATGAGAACAAAAGATTGAAGAAGGAATTGCAGGAACTACGTGCACTTAAGGTTGGACCGTCGCCACTATGCATTCAACTATCCAAAACGGCGACTCTGACAACTATGTGTTCTTCCTGCGATCGAGAATTAAAACTAGTAAATTAA 642 0.4143 MEDNNEECITGLCLGIGMGGHVPKKNKQKENKAVACLDLAFELCPKGEEAINVNLHHHHHEKVERISLERIHEYPNEKSTDSDNSNNNNRCRKKLRLSKEQSSMLENSFKQHSTLNPVQKQALADQLNLKTRQVEVWFQNRRARTKLKQTEVDHELLKKHCQNLSDENKRLKKELQELRALKVGPSPLCIQLSKTATLTTMCSSCDRELKLVN* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0742 213 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 9 208 - -
Gso13g0742 213 SMART halz 148 191 IPR003106 GO:0006355|GO:0043565
Gso13g0742 213 CDD homeodomain 92 149 IPR001356 GO:0003677
Gso13g0742 213 Pfam Homeobox associated leucine zipper 148 181 IPR003106 GO:0006355|GO:0043565
Gso13g0742 213 Pfam Homeodomain 92 146 IPR001356 GO:0003677
Gso13g0742 213 ProSitePatterns 'Homeobox' domain signature. 123 146 IPR017970 GO:0000981|GO:0006355
Gso13g0742 213 SMART HOX_1 90 152 IPR001356 GO:0003677
Gso13g0742 213 Coils Coil 147 181 - -
Gso13g0742 213 PANTHER - 9 208 - -
Gso13g0742 213 Gene3D - 96 146 - -
Gso13g0742 213 ProSiteProfiles 'Homeobox' domain profile. 88 148 IPR001356 GO:0003677
Gso13g0742 213 SUPERFAMILY Homeodomain-like 79 149 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0742 Gso-Chr13 21724270 21725911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0742 62 207 Homeobox Transcription Factor Family AT3G60390 61.224 7.47e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso13g0742 Homeodomain 1.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0742 K09338 - gmx:100812222 417.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0742 13 21724270 21725911 Gso17g0473 17 4277393 4279068 GST
Gso13g0742 13 21724270 21725911 Gso15g1385 15 15048981 15050797 PCT
Gso13g0742 13 21724270 21725911 Gso9g0527 9 5857298 5858919 PCT
Gso15g1385 15 15048981 15050797 Gso13g0742 13 21724270 21725911 PCT
Gso9g0527 9 5857298 5858919 Gso13g0742 13 21724270 21725911 PCT