Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0738 ATGACAGTAGATCTGGTAGGTGCTGCCAAGATGGGGATGGAGGAGAATATAGCGATACAAGAAGCAGCTTCCGCTGGGTTGAAGAGTATGGAGCATCTGATTCGTGTGCTTTCTTCTCAAATCCCTTCTTCTGCTTCGTCTTCTTCTAACGCACACCACCACCGTCTTAATCTCAACCACCTTGACTGCACCGAAATCACCGACTTCACTGTCTCCAAGTTCAAACAAGTCATCAACTTGTTGAATCGCACGGGACACGCTCGCTTTCGTCGCGCACCTTCTCATCCTTCTCCTTCTACTTCTCTTCCTTCTCAACCTCAACCTCAACCACAACCACAACCATATGCACTGACTCTTGATTTCGCAAAACCTGTTATGCTAAAGTCAAATCCCAACCCTAACCCTTCTTCTACCGATTTGTCGGTTTCTCAATATTCTAAGACCAAGGACACCACCACCTTTAGTATATCTCCTCCCGTGTCCACCACCACCTCCTCATTCATGTCCTCCATCACCGCCGACGGAAGTGTCTCCGACGGAAAGATCGGCCCCGCCATCATCGCTGCCGGCAAGCCTCCTCTCTCCTCATCCCACCGGAAAAGGTGTCACGACGCCACCCTCTCTGCCGGAAAAGCCTCTTCCTCCGCTCACTGCCATTGCTCCAAGAGAAGAAAATCTCGTGTGAAACGAATGATACGTGTGCCGGCGATAAGTTCGAAGATTGCCGATATCCCAGTGGACGAGTACTCATGGCGAAAGTATGGTCAAAAACCAATCAAAGGTTCACCTTACCCGCGAGGGTATTACAAGTGCAGTAGCGTGAGAGGGTGTCCGGCGAGGAAGCACGTTGAGCGAGCCCAGGATGACCCCAACATGCTCATCGTTACCTACGAGGGAGAGCACCGTCATCCGCAACCGCGTCTGCCGGAAACTGCTGCCGGTGCCGGCGCCGGCGGGACTTTTGCCGCTCATCCTGTTTAA 981 0.5219 MTVDLVGAAKMGMEENIAIQEAASAGLKSMEHLIRVLSSQIPSSASSSSNAHHHRLNLNHLDCTEITDFTVSKFKQVINLLNRTGHARFRRAPSHPSPSTSLPSQPQPQPQPQPYALTLDFAKPVMLKSNPNPNPSSTDLSVSQYSKTKDTTTFSISPPVSTTTSSFMSSITADGSVSDGKIGPAIIAAGKPPLSSSHRKRCHDATLSAGKASSSAHCHCSKRRKSRVKRMIRVPAISSKIADIPVDEYSWRKYGQKPIKGSPYPRGYYKCSSVRGCPARKHVERAQDDPNMLIVTYEGEHRHPQPRLPETAAGAGAGGTFAAHPV* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0738 326 MobiDBLite consensus disorder prediction 125 144 - -
Gso13g0738 326 Gene3D WRKY domain 231 307 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso13g0738 326 MobiDBLite consensus disorder prediction 301 326 - -
Gso13g0738 326 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 9 307 - -
Gso13g0738 326 Pfam WRKY DNA -binding domain 247 304 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso13g0738 326 Pfam Plant zinc cluster domain 199 243 IPR018872 -
Gso13g0738 326 MobiDBLite consensus disorder prediction 129 144 - -
Gso13g0738 326 SUPERFAMILY WRKY DNA-binding domain 244 306 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso13g0738 326 MobiDBLite consensus disorder prediction 99 113 - -
Gso13g0738 326 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 9 307 IPR044810 GO:0003700
Gso13g0738 326 MobiDBLite consensus disorder prediction 88 115 - -
Gso13g0738 326 ProSiteProfiles WRKY domain profile. 240 306 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso13g0738 326 SMART WRKY_cls 245 305 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0738 Gso-Chr13 21668752 21670390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0738 1 323 WRKY Transcription Factor Family AT2G24570 47.293 2.97e-92 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso13g0738 WRKY 2.3e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0738 - - gmx:732587 551.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0738 13 21668752 21670390 Gso17g0479 17 4331943 4333609 GST
Gso1g1625 1 52933084 52935024 Gso13g0738 13 21668752 21670390 PCT
Gso11g0456 11 4031654 4033329 Gso13g0738 13 21668752 21670390 PCT
Gso13g0738 13 21668752 21670390 Gso15g1381 15 14954611 14956607 PCT
Gso13g0738 13 21668752 21670390 Gso9g0524 9 5795549 5797698 PCT
Gso15g1381 15 14954611 14956607 Gso13g0738 13 21668752 21670390 PCT
Gso9g0524 9 5795549 5797698 Gso13g0738 13 21668752 21670390 PCT