Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0735 ATGAGTTTCTCCAAGGGTTCTCCTGGCAGCCAGACGCCGCAAGACATAGAGGCTGGGTCTCGGGCTAGCTTCTCTGCTGATTTTGATGATGGAGACTTTTCAGCTGATCCATTTGATGTTCCCAGAACAAAGAATGCTCCGGTTCAACGCCTCAGGCGTTGGAGGCAAGCGGCACTTGTGCTCAATGCTTCTCGTCGATTTCGTTACACCTTGGACTTAAAGAAAGAAGAAGAGACAAAGCGAGTATTAAGAATTGTTATAGTGCATACACGGGCCATTCAAGCCGCATATCGATTCAAGGAAGCTGGGCAAATGAATGGAACTATAAAACCTCCTTCAAGCTCCACTGGAGAATTTTCAGTTGGACTAGAACAACTTTCTTCAATTTCAAGGGACCGTGATGCTACTGCTCTGCAGGAAAATGGAGGGGTTGTAGGGTTATCACATTTGTTGAAAACCAATTTAGAGAAAGGGATTCAGGGTGATGATGCTGACTTGCTGAAACGGAGGAGTGCATTCGGCTCCAACAACTACCCACGAAAGAGTGGAAGAAGTTTTTTGATGTTTATGTGGGATGCTTGCAAGGATCTGACCTTGATTATTTTAATGGTAGCTGCAGTGGCTTCATTAGCACTGGGGATAAAATCTGAGGGTCTTAAGGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTCTTGTTACAGCTATAAGTGATTATAAGCAGTCTCTTCAGTTTCAAGACCTAAATGAGCACAAGAGAAACATACATTTGGAGGTTATTCGAGATGGTAGAAGAGTTGAGATCTCCATATATGATGTTGTTGTTGGTGATGTTATACCCCTTAACATTGGTAATCAGGTCCCTGCTGATGGAGTTTTGATCACCGGTCACTCTCTTGCAATTGATGAATCAAGTATGACTGGGGAGAGCAAGATTGTTGAAAAAAATTCTAATGATCCTTTTCTGATTTCTGGATGTAAAGTTGCAGATGGCAGTGGAACTATGCTGGTAACGGCTGTTGGTATCAATACTGAATGGGGTCTTCTAATGACCAGCATTTCCGAAGACAATGGCGAAGAAACTCCTTTGCAGGTACGCTTAAATGGTCTCACTACCTTAATTGGTATTGTTGGACTCTTTGTGGCTGTCGTTGTTCTGATGGTGCTACTGGCCAGATATTTCTCTGGGCATACTAGAAACCCAGATGGAAGTGTTCAATTTATAGCGGGCAAGACCAAAGTTGGTGATGCTATTGATGGAGTAATTAAGATATTCACTGTCGCGGTCACCATTGTGGTGATTGCAGTGCCTGAAGGGCTGCCTTTAGCAGTTACCTTAACACTTGCCTACTCAATGAAAAAAATGATGGCAGATAAAGCTTTGGTGAGGAGGCTTTCTGCCTGTGAGACAATGGGGTCAGCCACAACCATTTGCAGTGATAAGACTGGAACATTGACTATGAATCAGATGACTGTGGTTGAGGCTTGGATTGGTGGTGGGAAGAAGATTGTTCCTCCTTATGAGGAATCAAAGTTCTCTCATATGCTCTGCTCTTTGCTGATTGAAGGTGTTGCACAGAACACTAATGGAAGTGTATATATCCCTGAGGGTGGTAATGATGTTGAGGTTTCTGGATCACCAACAGAAAAGGCAATTTTAGAGTGGGGAATTAAGCTTGGGATGAATTTTGACACTGCCAGATCAGACTCATCAATTATTCATGTATTCCCATTCAATTCAGACAAAAAGCGAGGAGGAGTTGCAACACGGGTGTCTGACTCTGAAATCCATATACATTGGAAAGGTGCTGCTGAGATAGTCCTAGCTTGCTGTACACGGTATTTTGATGCAAATGATCAGTTGGTGGAGATGGATGAAGCTAAGATGTCAACTTTTAAAAAAGCTATTGAAGATATGGCTGCTGATAGTCTACGTTGTGTTGCGATTGCATATAGATCATATGAAATGAAGAATGTTCCGATTAGTGAAGAAGAACTTTCTCACTGGTCATTACCAGAGGATAATCTTGTTTTATTGGCTATTATTGGCCTAAAGGATCCTTGCCGACCTGGTGTCAAAGATGCAGTGAAGCTTTGCCAAAAGGCTGGGGTTGAGGTAAAAATGGTCACTGGTGACAACGTTAAAACTGCAAGAGCAATTGCTGTGGAATGTGGAATCCTTGGTTCAATTTCTGATGCTACAGAGCCAATCATCATTGAAGGAAAAAACTTTCGTGCCTTGACAGAAGAAGGGAGAGCAGATATTGTTGAAAAGATATTGGTTATGGGACGGTCATCTCCTAATGACAAGCTTTTGCTTGTGCAAGCATTGAGGAGGAAGGGGCATGTTGTGGCTGTAACTGGAGATGGAACAAATGATGCTCCTGCACTGCATGAGGCCGATATTGGTCTTGCAATGGGTATCCAAGGTACAGAAGTTGCTAAAGAGAGCTCTGATATCATTATTTTGGATGACAATTTTGCTTCAGTTGTGAAGGTTGTTAAATGGGGGCGGTCTGTATATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAGTCAATATAGCAGCACTTGCTATAAATGTTGTTGCTGCATTTTCCACCGGTGACATCCCACTAAATACAGTACAGCTTCTCTGGGTAAATCTTATCATGGATACTCTTGGAGCATTAGCCTTGGCAACTGAACCGCCAACTGATTCTCTGATGGATCAAAGCCCTAAGGGTCAAAGAGAACCTCTTGTATCAAATATTATGTGGAGGAATCTGCTGATACAGGCAATGTACCAATTGTCTGTCTTGCTTATACTTAATTTCCGAGGTGTGAGCTTACTGGGTTTGAGGGATGAGCCCAACCGCCCTGCAATCAAAGTGAAGAACTCTCTGATATTCAATGCATTTGTTCTTTGTCAAGTCTTTAATGAATTTAATGCCCGAAAGCCAGATAAATTCAACATATTCAAGGGAGTCACAAGAAACTACCTCTTTATGGGGATAGTAGGAATAACTGTTGTGCTTCAGATTGTCATCGTTGAATATCTTGGGAAGTTCACTAAAACAGCCAAGCTTAATTGGAAGCAGTGGCTCATTTCTGTTATTATAGCATTTATCAGCTGGCCTCTTGCTGTGGTTGGAAAACTGATACGAGTACCAAAGGCTGAACTCAGTAACTTGTTCCGAATTCGTAGAGGAAATTAA 3219 0.4216 MSFSKGSPGSQTPQDIEAGSRASFSADFDDGDFSADPFDVPRTKNAPVQRLRRWRQAALVLNASRRFRYTLDLKKEEETKRVLRIVIVHTRAIQAAYRFKEAGQMNGTIKPPSSSTGEFSVGLEQLSSISRDRDATALQENGGVVGLSHLLKTNLEKGIQGDDADLLKRRSAFGSNNYPRKSGRSFLMFMWDACKDLTLIILMVAAVASLALGIKSEGLKEGWYDGGSIAFAVILVILVTAISDYKQSLQFQDLNEHKRNIHLEVIRDGRRVEISIYDVVVGDVIPLNIGNQVPADGVLITGHSLAIDESSMTGESKIVEKNSNDPFLISGCKVADGSGTMLVTAVGINTEWGLLMTSISEDNGEETPLQVRLNGLTTLIGIVGLFVAVVVLMVLLARYFSGHTRNPDGSVQFIAGKTKVGDAIDGVIKIFTVAVTIVVIAVPEGLPLAVTLTLAYSMKKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEAWIGGGKKIVPPYEESKFSHMLCSLLIEGVAQNTNGSVYIPEGGNDVEVSGSPTEKAILEWGIKLGMNFDTARSDSSIIHVFPFNSDKKRGGVATRVSDSEIHIHWKGAAEIVLACCTRYFDANDQLVEMDEAKMSTFKKAIEDMAADSLRCVAIAYRSYEMKNVPISEEELSHWSLPEDNLVLLAIIGLKDPCRPGVKDAVKLCQKAGVEVKMVTGDNVKTARAIAVECGILGSISDATEPIIIEGKNFRALTEEGRADIVEKILVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVKWGRSVYANIQKFIQFQLTVNIAALAINVVAAFSTGDIPLNTVQLLWVNLIMDTLGALALATEPPTDSLMDQSPKGQREPLVSNIMWRNLLIQAMYQLSVLLILNFRGVSLLGLRDEPNRPAIKVKNSLIFNAFVLCQVFNEFNARKPDKFNIFKGVTRNYLFMGIVGITVVLQIVIVEYLGKFTKTAKLNWKQWLISVIIAFISWPLAVVGKLIRVPKAELSNLFRIRRGN* 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0735 1072 Pfam haloacid dehalogenase-like hydrolase 481 807 - -
Gso13g0735 1072 PRINTS P-type cation-transporting ATPase superfamily signature 308 322 - -
Gso13g0735 1072 PRINTS P-type cation-transporting ATPase superfamily signature 484 498 - -
Gso13g0735 1072 PRINTS P-type cation-transporting ATPase superfamily signature 686 697 - -
Gso13g0735 1072 PRINTS P-type cation-transporting ATPase superfamily signature 708 718 - -
Gso13g0735 1072 PRINTS P-type cation-transporting ATPase superfamily signature 793 812 - -
Gso13g0735 1072 PRINTS P-type cation-transporting ATPase superfamily signature 817 829 - -
Gso13g0735 1072 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 133 1055 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Gso13g0735 1072 PRINTS Sodium/potassium-transporting ATPase signature 227 247 - -
Gso13g0735 1072 PRINTS Sodium/potassium-transporting ATPase signature 477 498 - -
Gso13g0735 1072 PRINTS Sodium/potassium-transporting ATPase signature 604 622 - -
Gso13g0735 1072 PRINTS Sodium/potassium-transporting ATPase signature 865 886 - -
Gso13g0735 1072 Gene3D - 494 693 IPR023299 GO:0000166
Gso13g0735 1072 CDD P-type_ATPase_Ca_PMCA-like 166 926 - -
Gso13g0735 1072 Pfam Ca2+-ATPase N terminal autoinhibitory domain 35 78 IPR024750 GO:0005516
Gso13g0735 1072 Gene3D - 165 360 - -
Gso13g0735 1072 SMART Cation_ATPase_N_a_2 143 214 IPR004014 -
Gso13g0735 1072 PANTHER CATION TRANSPORTING ATPASE 31 1068 - -
Gso13g0735 1072 SUPERFAMILY HAD-like 482 898 IPR036412 -
Gso13g0735 1072 SUPERFAMILY Calcium ATPase, transmembrane domain M 143 1057 IPR023298 -
Gso13g0735 1072 Pfam Cation transporter/ATPase, N-terminus 142 209 IPR004014 -
Gso13g0735 1072 Pfam E1-E2 ATPase 262 462 - -
Gso13g0735 1072 ProSitePatterns E1-E2 ATPases phosphorylation site. 486 492 IPR018303 -
Gso13g0735 1072 SFLD p-type atpase 466 845 IPR044492 -
Gso13g0735 1072 PANTHER CALCIUM-TRANSPORTING ATPASE 31 1068 - -
Gso13g0735 1072 Pfam Cation transporting ATPase, C-terminus 878 1055 IPR006068 -
Gso13g0735 1072 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 761 873 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso13g0735 1072 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 229 398 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso13g0735 1072 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 424 527 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso13g0735 1072 Gene3D - 47 102 - -
Gso13g0735 1072 Gene3D - 481 838 IPR023214 -
Gso13g0735 1072 MobiDBLite consensus disorder prediction 1 19 - -
Gso13g0735 1072 SFLD C1.7: P-type atpase like 466 845 - -
Gso13g0735 1072 Gene3D - 192 1053 - -
Gso13g0735 1072 SUPERFAMILY Calcium ATPase, transduction domain A 262 357 IPR008250 -
Gso13g0735 1072 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 491 690 IPR023299 GO:0000166
Gso13g0735 1072 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0735 Gso-Chr13 21623549 21649377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0735 2 1070 Primary Pumps ATPases AT5G57110 69.963 0.0 1522
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0735 K01537 - gmx:100813841 2018.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0735 13 21623549 21649377 Gso17g0485 17 4376584 4401926 GST
Gso13g0735 13 21623549 21649377 Gso15g1376 15 14830364 14861292 PCT
Gso13g0735 13 21623549 21649377 Gso9g0517 9 5701917 5723153 PCT
Gso15g1376 15 14830364 14861292 Gso13g0735 13 21623549 21649377 PCT
Gso9g0517 9 5701917 5723153 Gso13g0735 13 21623549 21649377 PCT