Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0730 ATGGAGAATATTGGTGAGGATCAGTACGGCTACTTGCCGGAGACCGACCTGTTTTTCCCAAACGAAGACCTTGGCAGCTGGGCAATAATGGATGGGGAAGCGGTCTCATGGTACTATGATTCAAGCTCCCCGGACGGCACCGGTGCTTCTTCATCGGTGGCATCTAAGAACATTGTCTCCGAGAGGAATAGAAGGAAGAAGCTCAACGATAGGCTTTTGGCACTTAGAGCAGTGGTCCCCAACATTACCAAGATGGATAAGGCTTCTATCATTAAGGATGCTATAGAGTACATCCAGCACTTGCATGAACAAGAGAAGAGAATCCAAGCTGAGATTTTGGATCTAGAATCTAGGAATAAGTTCAAAAATCCAACCTATGAATTTGACCAGGACCTCCCTATTCTGCTCAGGTCTAAGAAGAAGAAAACAGAACACCTATTTGATTCTCTCAGTTCAAGAAATTCCCCATCAATTGAAATAATTGAGCTGAGGGTAACATACATGAGAGAGAAGACGTTTGTGGTGAACTTGACATGTAGTAAAAGGACAGACACAATGGTAAAACTGTGTGAGGTGTTCGAATCTTTAAAGCTCAAAGTCATTGCGGCCAATATCACATCTTTTTCAGGCACGCTTTTGAAGAAGACAGCCTTCATCGAGGCAGATGAAAAAGAGGAAGACTTTTTGAAGATAAAAATTCAGACAGCGATTTCAGCTCTCAATGATCCTCAAAGCCCAATGAGCATCTGA 750 0.4307 MENIGEDQYGYLPETDLFFPNEDLGSWAIMDGEAVSWYYDSSSPDGTGASSSVASKNIVSERNRRKKLNDRLLALRAVVPNITKMDKASIIKDAIEYIQHLHEQEKRIQAEILDLESRNKFKNPTYEFDQDLPILLRSKKKKTEHLFDSLSSRNSPSIEIIELRVTYMREKTFVVNLTCSKRTDTMVKLCEVFESLKLKVIAANITSFSGTLLKKTAFIEADEKEEDFLKIKIQTAISALNDPQSPMSI* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0730 249 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 51 118 IPR036638 GO:0046983
Gso13g0730 249 SMART finulus 58 107 IPR011598 GO:0046983
Gso13g0730 249 Coils Coil 98 118 - -
Gso13g0730 249 Pfam Helix-loop-helix DNA-binding domain 59 102 IPR011598 GO:0046983
Gso13g0730 249 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 243 - -
Gso13g0730 249 PANTHER TRANSCRIPTION FACTOR BHLH35 1 243 - -
Gso13g0730 249 Gene3D - 50 119 IPR036638 GO:0046983
Gso13g0730 249 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 52 101 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0730 Gso-Chr13 21554306 21561362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0730 1 220 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 56.951 1.75e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso13g0730 HLH 6.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0730 - - gmx:100803326 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0730 13 21554306 21561362 Gso17g0492 17 4470874 4477713 GST
Gso13g0730 13 21554306 21561362 Gso15g1371 15 14587833 14596379 PCT
Gso13g0730 13 21554306 21561362 Gso9g0509 9 5504544 5513305 PCT
Gso15g1371 15 14587833 14596379 Gso13g0730 13 21554306 21561362 PCT
Gso9g0509 9 5504544 5513305 Gso13g0730 13 21554306 21561362 PCT