Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0726 ATGTCTTCTTCGTGTTTGAGTGGAGCCGGGGGAAGAACCTATGGATTCGATTTCGAATTCGTTAAATCTCCATCTTCATCTACTTTCACATCGCACACATCTTCTTCACCTTCCTCAACAATCTCCGAATCGAGCAATTCGCCGCTAGCAATCTCAACTAAGAAACCCAGAACACCGCGGAAGCGACCCAACCAAACCTACAACGAAGCCGCGGCGCTTCTCTCCACCGCGTACCCGAATTTGTTCTCCACGAAGAACCTCAAGACGCAGGGCAAAGGCAAATTCTCGAGGCCCACATCGGAGAATTTCGATTACGAGTCTTCGGAGCCGTTATTGCCGTTCAGAGTCTTCGACGGAACGGCGTCGTGTTTTCTTTTGGACCAAACGGGCCCGAAGCCCATCATGGAGAGGCCCAAAGTGGTGAGCGTGCAGGAGAAGGAGAATAATAATAACAAGGCGTGTGAGAGCCCCGGCGAGATAAGCTCCATCGTGAATTTCAATTCAGTTGAATTGAACGATGACGGAGAAGAGAGCCTCGACGCGGAATCGATTCTCGATGAGGAAATCGAAGAAGGGATCGATAGCATCATGGGGAGCAGTATCCAAGAGGTCTCAAACGACGCCGTTAGTAACTTGCCCTGGATTATGCCTTTTGACGGGAAATTGGAGTTCCCGAGACCCCGTGTTAGGGCTCTCCGCCACGTCGACGACGGAAACTGGTGGAATTTTCCGGCCGTCGATATTCTTTCAATATCGCCCAAAATTAACACCAAGCCTCCGCCCGTGGCCGCCGAGAAGAAGATGAAGAAGAAGAAGAAGGTGGCCACGCCGGCGGAGAAAACGGTCGTCGTGGAGTTGAAGAACGCGGAATTGCCCAAACCGAAACAGGGTTTGATGTTGAAATTGAATTACGACGACGTTCGGAACGCTTGGTCTGACCGCGGAACACCGTTCTCCGACGACAGTCCCCTAGCCGACGTGCCGGAAAATGACGTCACTGCGCGGCTGTCGCAAATTGATTTGTTGTGGGACAATGGAGGAGTGAGAGAAGCTAGCGTGCTGCGCTACAAGGAGAAGCGGCGAACGCGCCTCTTCTCGAAGAAGATCAGGTACCAGGTCAGGAAAGTCAACGCAGATCGACGGCCCAGAATGAAGGGACGATTTGTTAGGAGGCTCAATTCTAGCGCAAATGCACACAGATGA 1203 0.5204 MSSSCLSGAGGRTYGFDFEFVKSPSSSTFTSHTSSSPSSTISESSNSPLAISTKKPRTPRKRPNQTYNEAAALLSTAYPNLFSTKNLKTQGKGKFSRPTSENFDYESSEPLLPFRVFDGTASCFLLDQTGPKPIMERPKVVSVQEKENNNNKACESPGEISSIVNFNSVELNDDGEESLDAESILDEEIEEGIDSIMGSSIQEVSNDAVSNLPWIMPFDGKLEFPRPRVRALRHVDDGNWWNFPAVDILSISPKINTKPPPVAAEKKMKKKKKVATPAEKTVVVELKNAELPKPKQGLMLKLNYDDVRNAWSDRGTPFSDDSPLADVPENDVTARLSQIDLLWDNGGVREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRRLNSSANAHR* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0726 400 Pfam CCT motif 349 390 IPR010402 GO:0005515
Gso13g0726 400 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 395 - -
Gso13g0726 400 PANTHER OS02G0148000 PROTEIN 1 395 - -
Gso13g0726 400 MobiDBLite consensus disorder prediction 24 64 - -
Gso13g0726 400 MobiDBLite consensus disorder prediction 24 53 - -
Gso13g0726 400 ProSiteProfiles CCT domain profile. 349 391 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0726 Gso-Chr13 21524286 21527683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0726 282 391 C2C2-CO-like Transcription Factor Family AT1G25440 45.038 3.48e-22 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso13g0726 CCT 7.7e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0726 - - gmx:100784788 744.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0726 13 21524286 21527683 Gso17g0495 17 4498786 4502303 GST
Gso13g0726 13 21524286 21527683 Gso15g1367 15 14511089 14513829 PCT
Gso13g0726 13 21524286 21527683 Gso9g0507 9 5454676 5457051 PCT
Gso15g1367 15 14511089 14513829 Gso13g0726 13 21524286 21527683 PCT
Gso9g0507 9 5454676 5457051 Gso13g0726 13 21524286 21527683 PCT