Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0724 ATGCGGGACAGTGAGAAGAAGTTAAACAACAAAGGATCTAAAAAATCCAGTCCTTTGAAGGTGCGTAAGAAGGGCCAAGGGAAGAAGGAAAAAGTGAAAGTGGGATCAAAATCTCACACAAAAAATGCTGGCACTGATATATCAAGGAAGAGGGTCATCTCTTCTCTCAAGGTCAAAGGGCCACGTAAGGATTCTTCAGATAAGAAATTGATTACTGGAAAAAAATTGCCTATGAAGAACAAAAAATCTTCACAGAAGTCATCCTCAAAGTTACAAGGCAAAAAAGCTTCTCTTAGCTCTAGAAAAGAGGGGGGAGATGCTGATGGGGCGGTAAAGCTTCAAAAAATGAAGAGGAAGAGAAAGAAGAAAAGGCCAAGGAATAATGTGGATCTTGATGATCCTTCACGCCTACAGAGGAGAACAAGGTATCTTTTAATCAAAATGAAGCTAGAGCAGAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAGAGTCGAGAAAAGATTAGGCCAGAAAAGGAGCTACAAAGAGCAAGGAAGCAGATTTTAAAATGTAGACTTGGTATTCGTGATGCCATTCGCCAGTTGGATTCTCTTGGTTCACTGAGTAGCATTGAAGATTCTGCCATTGCTCTAGATGGATCTGTTTGCCATGAACATATATTGTGTGTAAAGTGCAAGGTGCATGAAGAACTTCCAGATAATGATATTATACTATGCAATGGTAAATGCGAGCGTGCTTTTCACCAAAAATGTCTAGACCCTCCTTTGGACACCGAAAATATTTCTCCTGGAGAGCAGGGTTGGTTTTGTAAATTTTGTGAATGTAAGATGGAAATACTGGAGGCAACTAATGCTCATCTTGGAACTCACTTCTCGTTGCACAGTACTTGGCAGGATGTATTCAAAGAAGAGGCAGCTATACCTGATGGTGAGATTGCATTACTAAATCCTGAACAAGAATGGCCATCAGATGATTCCGAAGATGATGATTATGACCCAGAGAGGAAAGAAGACAGCCACAATATCAACATAGAAGGAACTAATGATAGTGCATCTGAGGATTTAAGCAGTTCTACCAGTCTGTGTTCTTCTGATGGTGAATGTTCTCCAATAGATGGTGTCAGTCATGAATATTTTTCTGTCAATAGCAGCATAGATTCTGATGAGTCTGAGGACAAAGCCTGTGGGCGTAGGCAGAGAAAAGCTGTTGACTACAAGAAACTTTATGATGAAATGTTTGGGAAAGATGCGCCTGCCTATGAACTATTGAGTGAAGATGAAGACTGGGGTCCTGGCAAAAGAAAGCGAAGAGAAAAGGAGTCTGATGCTGTTGATTCTCTTATGACTTTGCATGAAAGTGAGAATAGGCATCCCAATAATGAGCACAACATGACAAGTAAAGATTCTTCAAGCATAAAGATCAAAAGGCATTGTTTTAGGATTCCACGTGATGCAGTTGAGAGGCTTCGCCAAGTTTTTGCTGAGAACGAACTTCCTCCAAGATCTATAAGAGAGGGTCTTTCAAAAGAGCTGGGCCTTGACACCGAGAAGGTCAGCAAATGGTTCAAAAATGCACGTTACTTAGCACTTAAAAACAGAAAGCATCAAGCAGAAGGAGTAGCAGATCAGCTTCAGAGTATCACTTCTACAAAGAACAGATTACAAAAACAGGAGAATGTCGATCCTTTGAAATCAAAGACCTCAAAAATTACTAGGACACATTCCCAGAAGGATGTTAAAAATGTCAATGGAAGAAAGAAAATGAAGTCATCTAACAAGAAAAGACAACCAGAAATTCCTCCACCTCCAGGAGAAAATGGCATGAAGGACTTTATGGAGATCAGTGATGATGTGAGCTTGAAGAAACTGTTGAAGAAAAGAAAAAAGAGGTTGATAAATTTTACGTTTGGAGGAGACTCTCAGTTGGCAGAGTTGGAATTTGAAAGACTAAGCGAATTGAAGACTAAAGTAGATAGTATGAAGCAAAAATTAACTGCAATTCAAAATTACAGAGTTAAGGGTTCACCCTATTCGAATGAACCATCCATTGTATATGTACCCACAGCTGTGTTAAGGGAAAAGGTTGAATGA 2100 0.3981 MRDSEKKLNNKGSKKSSPLKVRKKGQGKKEKVKVGSKSHTKNAGTDISRKRVISSLKVKGPRKDSSDKKLITGKKLPMKNKKSSQKSSSKLQGKKASLSSRKEGGDADGAVKLQKMKRKRKKKRPRNNVDLDDPSRLQRRTRYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRARKQILKCRLGIRDAIRQLDSLGSLSSIEDSAIALDGSVCHEHILCVKCKVHEELPDNDIILCNGKCERAFHQKCLDPPLDTENISPGEQGWFCKFCECKMEILEATNAHLGTHFSLHSTWQDVFKEEAAIPDGEIALLNPEQEWPSDDSEDDDYDPERKEDSHNINIEGTNDSASEDLSSSTSLCSSDGECSPIDGVSHEYFSVNSSIDSDESEDKACGRRQRKAVDYKKLYDEMFGKDAPAYELLSEDEDWGPGKRKRREKESDAVDSLMTLHESENRHPNNEHNMTSKDSSSIKIKRHCFRIPRDAVERLRQVFAENELPPRSIREGLSKELGLDTEKVSKWFKNARYLALKNRKHQAEGVADQLQSITSTKNRLQKQENVDPLKSKTSKITRTHSQKDVKNVNGRKKMKSSNKKRQPEIPPPPGENGMKDFMEISDDVSLKKLLKKRKKRLINFTFGGDSQLAELEFERLSELKTKVDSMKQKLTAIQNYRVKGSPYSNEPSIVYVPTAVLREKVE* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0724 699 SMART PHD_3 224 277 IPR001965 -
Gso13g0724 699 MobiDBLite consensus disorder prediction 347 369 - -
Gso13g0724 699 MobiDBLite consensus disorder prediction 318 369 - -
Gso13g0724 699 ProSiteProfiles Zinc finger PHD-type profile. 222 279 IPR019787 -
Gso13g0724 699 Coils Coil 695 699 - -
Gso13g0724 699 SUPERFAMILY Homeodomain-like 471 534 IPR009057 -
Gso13g0724 699 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 2 672 - -
Gso13g0724 699 MobiDBLite consensus disorder prediction 57 74 - -
Gso13g0724 699 MobiDBLite consensus disorder prediction 16 30 - -
Gso13g0724 699 Gene3D - 459 541 - -
Gso13g0724 699 SMART HOX_1 477 539 IPR001356 GO:0003677
Gso13g0724 699 Pfam Homeodomain 486 530 IPR001356 GO:0003677
Gso13g0724 699 MobiDBLite consensus disorder prediction 542 559 - -
Gso13g0724 699 MobiDBLite consensus disorder prediction 96 113 - -
Gso13g0724 699 Pfam PHD-finger 225 279 IPR019787 -
Gso13g0724 699 MobiDBLite consensus disorder prediction 539 611 - -
Gso13g0724 699 SUPERFAMILY FYVE/PHD zinc finger 215 282 IPR011011 -
Gso13g0724 699 CDD PHD_PRHA_like 224 276 IPR045876 -
Gso13g0724 699 ProSitePatterns Zinc finger PHD-type signature. 225 276 IPR019786 -
Gso13g0724 699 Coils Coil 653 673 - -
Gso13g0724 699 PANTHER POLYCOMB PROTEIN PCL 2 672 - -
Gso13g0724 699 MobiDBLite consensus disorder prediction 453 474 - -
Gso13g0724 699 MobiDBLite consensus disorder prediction 1 134 - -
Gso13g0724 699 MobiDBLite consensus disorder prediction 560 588 - -
Gso13g0724 699 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 216 273 IPR013083 -
Gso13g0724 699 CDD homeodomain 476 539 IPR001356 GO:0003677
Gso13g0724 699 ProSiteProfiles 'Homeobox' domain profile. 475 535 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0724 Gso-Chr13 21512507 21518191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0724 127 540 Homeobox Transcription Factor Family AT4G29940 55.529 1.12e-150 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Gso13g0724 Homeodomain 6.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0724 - - gmx:100815437 1291.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0724 13 21512507 21518191 Gso17g0497 17 4513312 4519159 GST
Gso13g0724 13 21512507 21518191 Gso15g1366 15 14492018 14505883 PCT
Gso13g0724 13 21512507 21518191 Gso9g0506 9 5446047 5453096 PCT
Gso15g1366 15 14492018 14505883 Gso13g0724 13 21512507 21518191 PCT
Gso9g0506 9 5446047 5453096 Gso13g0724 13 21512507 21518191 PCT