Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0703 ATGGAGTGGGACAGCAATTCCGATCTGAGCGGGGACGAAGAGGAGGAAGGGTTCGTCTTCAACGACGGCGACGACGCTGGCCCTCTCCCGTTCCCCTTCCCCGTCGTCGAAAACCTCCTCCAAACGGCTCCCTGCGGCTTCGTCGTCACCGACGCGCACGAGCCTGACAACCCTATCATTTACGTCAACACCGTCTTCGAGATCGTCACCGGATACCGCGCCGAGGACGTTCTCGGCCGGAATTGCCGTTTCTTGCAGTGTCGAGGTCCATTTGCTAAGAGAAGGCATCCGTTGGTGGACTCAACAGTAGTTTCAGAAATTAGAAGATGCCTTGAAGAGGGGATTGAATTCCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCTCTGATGAACAGATTGCGGCTGACACCTATATATGGAGATGATGAGACTATAACACATGTCATTGGAATCCAGTTCTTCACAGAGGCAAACATTGATCTTGGTCCTGTTCCGGGTTCTACAATTAAGGAATCTGCTAAATCGTCTGATCGATTTCGTTCCGTGCTTTCCTCGTTGCAGACTCTTCCAGTGGGGGGCAGGAATGTATCTCGTGGAGTTTGTGGGATTTTTCAACTGAGTGATGAGGTACTGTCTCTCAAGATACTTGCTCAATTAACTCCTAGAGATATTGCATCAGTTAGCTCTGTCTGTAGACGATTATATGAGCTGACAAAAAACGAAGACCTCTGGAGAATGGTTTGCCAAAATGCATGGGGCAGTGAGACTACACATGTTTTAGAGACTGTGCCTGGTGCAAGGAGACTTGGATGGGGTCGGCTGGCAAGGGAATTGACCACTCTTGAAGCAGCAGCATGGAGGAAGTTGACTGTTGGAGGTGCTGTTGAACCCTCACGCTGTAATTTTAGTGCTTGTGCAGTTGGTAATAGAGTTGTGCTTTTTGGTGGTGAAGGGGTTAACATGCAACCCATGAATGACACCTTTGTATTGGATCTCAATTCTAGTAATCCTGAGTGGCAACACGTCCAGGTAAGCTCTCCTCCTCCTGGTCGTTGGGGCCACACGCTTTCTTGTGTTAATGGTTCTCATTTGGTTGTATTTGGAGGCTGTGGAAGGCAGGGCTTGCTCAATGATGTGTTTGTCCTGGACCTGGATGCAAAGCCTCCAACTTGGCGTGAAATTTCTGGATTGGCACCTCCACTTCCCAGATCATGGCACAGCTCCTGTACTCTTGATGGTACTAAGTTGATAGTTTCTGGGGGATGTGCAGACTCTGGAGTTCTCTTGAGTGACACTTTCCTCCTTGATTTGTCAATGGAGAAGCCTGTCTGGAGAGAGATACCAGTGGCATGGACCCCACCATCTCGTCTGGGCCACACATTGTCTGTTTATGGTGGTAGGAAAATACTGATGTTTGGGGGTCTGGCCAAGAGTGGGCCCTTGCGTTTTCGTTCCAGTGATGTATTCACAATGGATTTAAGTGAGGAAGAACCTTGTTGGAGATGTGTGACAGGGAGTGGCATGCCTGGTGCTGGAAATCCTGGGGGCATAGCTCCTCCTCCTAGACTTGATCATGTTGCTGTTAGTCTTCCAGGTGGGAGAATTCTAATATTTGGTGGGTCTGTTGCTGGTCTTCACTCTGCCTCTCAGCTTTACATTCTTGATCCAACTGATGAGAAGCCTACATGGAGAATCCTAAATGTACCTGGGTGCCCTCCAAGATTTGCTTGGGGACACAGTACATGTGTTGTTGGAGGAACAAGAGCTATCGTACTGGGTGGTCAAACCGGGGAGGAATGGATGCTAAGCGAGCTCCATGAACTTTCCTTGGCTAGCTCTGCCATCTAA 1854 0.4914 MEWDSNSDLSGDEEEEGFVFNDGDDAGPLPFPFPVVENLLQTAPCGFVVTDAHEPDNPIIYVNTVFEIVTGYRAEDVLGRNCRFLQCRGPFAKRRHPLVDSTVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLTPIYGDDETITHVIGIQFFTEANIDLGPVPGSTIKESAKSSDRFRSVLSSLQTLPVGGRNVSRGVCGIFQLSDEVLSLKILAQLTPRDIASVSSVCRRLYELTKNEDLWRMVCQNAWGSETTHVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVQVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGCPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASSAI* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0703 617 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 1 616 - -
Gso13g0703 617 Pfam PAS domain 44 154 IPR000014 -
Gso13g0703 617 ProSiteProfiles PAS repeat profile. 36 114 IPR000014 -
Gso13g0703 617 CDD PAS 43 153 IPR000014 -
Gso13g0703 617 Pfam Galactose oxidase, central domain 301 351 - -
Gso13g0703 617 PANTHER ADAGIO PROTEIN 1-LIKE 1 616 - -
Gso13g0703 617 SUPERFAMILY Kelch motif 455 610 IPR015915 GO:0005515
Gso13g0703 617 TIGRFAM sensory_box: PAS domain S-box protein 38 153 IPR000014 -
Gso13g0703 617 Pfam F-box-like 213 251 IPR001810 GO:0005515
Gso13g0703 617 Pfam Galactose oxidase, central domain 365 412 - -
Gso13g0703 617 ProSiteProfiles F-box domain profile. 216 249 IPR001810 GO:0005515
Gso13g0703 617 Gene3D - 202 249 - -
Gso13g0703 617 MobiDBLite consensus disorder prediction 1 21 - -
Gso13g0703 617 SUPERFAMILY PYP-like sensor domain (PAS domain) 43 154 IPR035965 -
Gso13g0703 617 Pfam Kelch motif 458 509 IPR011498 GO:0005515
Gso13g0703 617 Pfam Kelch motif 525 572 IPR011498 GO:0005515
Gso13g0703 617 SUPERFAMILY Kelch motif 287 503 IPR015915 GO:0005515
Gso13g0703 617 Gene3D PAS domain 29 165 - -
Gso13g0703 617 SUPERFAMILY F-box domain 198 266 IPR036047 GO:0005515
Gso13g0703 617 Gene3D - 432 615 IPR015915 GO:0005515
Gso13g0703 617 Gene3D - 280 431 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0703 Gso-Chr13 21235620 21239971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0703 33 204 AGC Kinase Gene Family AT5G58140 34.054 2.60e-21 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0703 K12115 - gmx:100301888 1219.91