Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0700 ATGAGGTATATTCGGAGCAACAGCTTCAAGAGGCTCTTCTCATTCAGAAGACGCAGTTCAAGGGAACAGATTCTGAGTCCTAACAGTAAGGGTGAAGAAAACTATGAGATTTTTCCGCATGAAGAAGAACCTTCTCGAAGACCCTCTTGGAAGTGCTTCTCTTATGAAGAGTTGTTTGATGCCACCAATGGCTTCAGCTCAGAAAATTTGGTGGGAAAAGGAGGGTATGCAGAGGTTTACAAAGGAACCATGAGTGGTAGTGAGGAAATTGCTGTGAAGAGACTCACAAAAACTTCAAGGGATGAGAGAAAGGAGAAGGAATTTTTGACAGAGATTGGTACAATTGGTCATGTGAACCATTCCAACGTTTTGCCTCTTTTGGGGTGTTGTATTGACAATGGCCTTTACCTTGTTTTTGAGTTATCTTCCACAGGTTCTGTTGCATCTCTTCTTCATGATGAAAGATTGCCTCCCTTAGATTGGAAAACGAGGCACAAGATAGCCATCGGAACTGCACGAGGCCTTCACTACTTGCATAAAGGTTGCAAGAGGAGGATAATCCACCGGGACATTAAGGCTTCAAACATTTTGTTAACAAAGGATTTTGAACCACAGATATCTGATTTTGGACTAGCAAAGTGGCTTCCATCTCAATGGACTCATCATTCAATTGCCCCTATAGAAGGGACATTTGGACATTTGGCCCCAGAGTACTACTTGCATGGAGTTGTTGATGAGAAGACAGATGTGTTTGCCTTTGGTGTGTTCTTGTTAGAAGTAATCTCTGGCAGAAAACCAGTGGATGGGTCTCACCAAAGCTTACATAGCTGGGCTAAACCAATTTTGAACAAGGGAGAGATAGAAGAGTTGGTGGATCCAAGGCTTGAGGGGGCTTATGATGTGACTCAGTTAAAAAGTTTTGCCTGCGCTGCCTCTCTTTGTATTCGGGCATCTTCAACTTGGCGACCTACCATGAGTGAGGTATTAGAGATAATGGAGGAAGGAGAGACGGATATAGAGAAGTGGAAAATGCCAGAGGAAGAAAAAGAGCAAGAAGAGGAGTTCTGGGGTTTTGAGGATCTGGAATATGAATATGACAGCTCCTTTTCAATGTCTTTACTTGACTCCATTGGAAGTACTTAA 1143 0.4287 MRYIRSNSFKRLFSFRRRSSREQILSPNSKGEENYEIFPHEEEPSRRPSWKCFSYEELFDATNGFSSENLVGKGGYAEVYKGTMSGSEEIAVKRLTKTSRDERKEKEFLTEIGTIGHVNHSNVLPLLGCCIDNGLYLVFELSSTGSVASLLHDERLPPLDWKTRHKIAIGTARGLHYLHKGCKRRIIHRDIKASNILLTKDFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYYLHGVVDEKTDVFAFGVFLLEVISGRKPVDGSHQSLHSWAKPILNKGEIEELVDPRLEGAYDVTQLKSFACAASLCIRASSTWRPTMSEVLEIMEEGETDIEKWKMPEEEKEQEEEFWGFEDLEYEYDSSFSMSLLDSIGST* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0700 380 ProSitePatterns Protein kinases ATP-binding region signature. 71 93 IPR017441 GO:0005524
Gso13g0700 380 Gene3D Phosphorylase Kinase; domain 1 36 141 - -
Gso13g0700 380 PANTHER OS08G0249100 PROTEIN 16 362 - -
Gso13g0700 380 SUPERFAMILY Protein kinase-like (PK-like) 42 332 IPR011009 -
Gso13g0700 380 Gene3D Transferase(Phosphotransferase) domain 1 143 357 - -
Gso13g0700 380 PANTHER OS04G0654600 PROTEIN 16 362 - -
Gso13g0700 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 186 198 IPR008271 GO:0004672|GO:0006468
Gso13g0700 380 Pfam Protein tyrosine and serine/threonine kinase 68 273 IPR001245 GO:0004672|GO:0006468
Gso13g0700 380 ProSiteProfiles Protein kinase domain profile. 65 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0700 380 SMART serkin_6 65 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0700 Gso-Chr13 21212174 21217218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0700 30 355 Receptor kinase-like Gene Family AT4G33430 41.667 5.20e-72 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gso13g0700 PK_Tyr_Ser-Thr 4.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0700 - - gmx:100819499 723.391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0700 13 21212174 21217218 Gso17g0523 17 4780428 4785850 GST
Gso13g0700 13 21212174 21217218 Gso15g1325 15 13813679 13818069 PCT
Gso13g0700 13 21212174 21217218 Gso9g0469 9 4864405 4868962 PCT
Gso15g1325 15 13813679 13818069 Gso13g0700 13 21212174 21217218 PCT
Gso9g0469 9 4864405 4868962 Gso13g0700 13 21212174 21217218 PCT