Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0697 ATGGCTACAGATTCGTCTTTTGAGGGCCTTGCACTTGATCCTTCTAAGTGCAGTAAATTGAGTATGGAGGAAAAAAGAGAACTTGTATATGAAGTATCTAACTGGTTGCATGGTGCATCTGAGATGCTGCAGTCATGGAGTCGTCAAGAGATTTTGCAAATATTGTGTGCAGAAATGGGGAAAGAGAGAAAGTATACTGGGCTGACAAAGTTGAAAATTATAGAAAATCTTCTAAAGATTGTTTCTGAAAAGAAATCAGGCGGGAATGAAACTGCGACAGACCCTGAACCACAATCTTCTCCTGCACCTGGTCAGAAGCCTGCCAAAAGGCAGAGAAAGTCTGAGAATCCTTCTCACATCCCTGTTCCTGCGACCAGCGTTCCAGTCAATAATGGTGGTGATTCTATTAATACCACATTCTGCAAAAACTCAGCTTGCAAAGCTACCCTGAATCAATCAGATGCATTTTGCAAAAGATGTTCATGCTGCATTTGTCATCAATATGATGACAACAAAGACCCTAGCCTGTGGTTAATATGTAGTTCTGAGAATCCATTTCCTGGTGTTTCTTGTGGCTTGTCATGCCACCTTGAGTGTGCTTTAAAACATGATGGTTCAGGAATTGGCAAGGATGGTGAGCGTCCCAAGCTTGATGGAGGCTTCTACTGTGTCTCTTGTTGGAAAATAAATGATTTACTCGGATGCTGGAGAAAACAACTGATGGTAGCAAAGGATACTAGACGCGTAGATATACTCTGTTATCGTGTCTCCTTAAGCCAAAGACTTTTACAAGGAACTGAAATGTATGAAGAACTTTATAAAATTGTTGATGAAGCAGTGAAGAAACTTGAACCTGAAGTGGGTCCACTCACTGGCTCACCGGTGAAGATTGGAAGGGGGATTGTGAACAGGCTTTCTTCGGGACCTGAGGTTCAGAAACTCTGTGGTTTTGCTCTGGAATCACTTGATTCATTATCGAAAAGGATCTTGCCTTTGTCACCCAAGCCAACAAATCAAGATGCATATTTGCTCGCTCCAAATATGTTGAGGTTTGAAGATGTCACTGCCACTACCCTCACTATTATTTTGGGTTCTGAAGAACCCTCTGGTGAAATTCTTGCTGGTTACACCTTGTGGCATCGCAAAGTTGATGATGTGGACTATCCCACGGACCCAACTTGCACCTCGCTCTTACCAAATAGAAGGTTCAGTGTCTCGGGCCTAATTCCAGGTACAGAATACAGTTTCAAAGTTGTTTCCAATGATTTGAGGGAGTCAGGTATGTGCGAAGTTCAAGTCTCAACAGAGCATGGTGAGGAAGAAGTCCCTAATTGCTCAGCAACTGAAAGAAGTCAGAGCCCGGTAACCAACTGTAGCAGCCTTTCCAATCCATCATCCGTGGAAGATGAAACTAATAACTGTAATCCATATAGTGACCTGACTGATAACCGAGCAGACCATTATCCTTCTTATCACAAGGATAGCAACAAACTTGCTTCTGGAAATTTATCCAATGATGCTATTAACTGTTCCAATCTAGGTGGTGTGGGACTTCCTCCTGATGCAGATTCTTTGTCAGACAAACAGCATGCTGGAGGAACGACTGCCTCCATACCTAGTTCTGATGTGCTAAAGCTCGAAAACAAGCATTCACCAGAGGAACAAATCACTGAGGACATGAGCACCGATGATGGGTTGATTTCCCCAGCTCTAACAGGGAGGGAATGTGTGCCGTTAGTGGGTAGCTCGGAAGGAGGCTTGCCTAATACTCCCTGCAAGTTGGAAACACTTAAGGATGGACCTGGAAAGAATAAAAGATCTAAGTCCAGTGGCAAAGATCAAGAAAATGTATCCGGGAAAAGGGAGGGTCCCCAAGATGGAAGCACATCCAAGAAGAGAAGTGGAGAAAGGCAAGAGGAGGGCCGTGTTGCAAATGGCTTTTCGGATCGTGATTTTGAGTATTATGTGAAGGTGATTAGGTGGTTAGAGTGTGAAGGTCACATAGAAAAGAACTTCAGGCAGAAATTTCTGACTTGGTACAGCTTAAGAGCCACCCCTCAAGAAGTTAGGATTGTGAAAATATACATTGATACATTTCTTGAAGATCCTGCATCTCTTGCAGAGCAACTTGTGGACACCTTCTCGGAATGTTTGTCCAGCAAGAGAACATCAGTTGTGCCAGCGGGGTTCTGCATGAAGCTTTGGCATTGA 2211 0.4355 MATDSSFEGLALDPSKCSKLSMEEKRELVYEVSNWLHGASEMLQSWSRQEILQILCAEMGKERKYTGLTKLKIIENLLKIVSEKKSGGNETATDPEPQSSPAPGQKPAKRQRKSENPSHIPVPATSVPVNNGGDSINTTFCKNSACKATLNQSDAFCKRCSCCICHQYDDNKDPSLWLICSSENPFPGVSCGLSCHLECALKHDGSGIGKDGERPKLDGGFYCVSCWKINDLLGCWRKQLMVAKDTRRVDILCYRVSLSQRLLQGTEMYEELYKIVDEAVKKLEPEVGPLTGSPVKIGRGIVNRLSSGPEVQKLCGFALESLDSLSKRILPLSPKPTNQDAYLLAPNMLRFEDVTATTLTIILGSEEPSGEILAGYTLWHRKVDDVDYPTDPTCTSLLPNRRFSVSGLIPGTEYSFKVVSNDLRESGMCEVQVSTEHGEEEVPNCSATERSQSPVTNCSSLSNPSSVEDETNNCNPYSDLTDNRADHYPSYHKDSNKLASGNLSNDAINCSNLGGVGLPPDADSLSDKQHAGGTTASIPSSDVLKLENKHSPEEQITEDMSTDDGLISPALTGRECVPLVGSSEGGLPNTPCKLETLKDGPGKNKRSKSSGKDQENVSGKREGPQDGSTSKKRSGERQEEGRVANGFSDRDFEYYVKVIRWLECEGHIEKNFRQKFLTWYSLRATPQEVRIVKIYIDTFLEDPASLAEQLVDTFSECLSSKRTSVVPAGFCMKLWH* 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0697 736 MobiDBLite consensus disorder prediction 598 643 - -
Gso13g0697 736 MobiDBLite consensus disorder prediction 520 643 - -
Gso13g0697 736 MobiDBLite consensus disorder prediction 439 478 - -
Gso13g0697 736 MobiDBLite consensus disorder prediction 86 130 - -
Gso13g0697 736 ProSiteProfiles Fibronectin type-III domain profile. 345 440 IPR003961 GO:0005515
Gso13g0697 736 SUPERFAMILY Fibronectin type III 345 420 IPR036116 GO:0005515
Gso13g0697 736 PANTHER VIN3-LIKE PROTEIN 2-RELATED 9 736 IPR044514 GO:0010048|GO:0040029
Gso13g0697 736 PANTHER VIN3-LIKE PROTEIN 2-RELATED 9 736 - -
Gso13g0697 736 MobiDBLite consensus disorder prediction 528 544 - -
Gso13g0697 736 CDD PHD_VIN3_plant 161 226 - -
Gso13g0697 736 CDD FN3 345 419 IPR003961 GO:0005515
Gso13g0697 736 Pfam PHD - plant homeodomain finger protein 141 260 IPR032881 -
Gso13g0697 736 Gene3D Immunoglobulins 343 442 IPR013783 -
Gso13g0697 736 MobiDBLite consensus disorder prediction 435 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0697 Gso-Chr13 21189176 21194356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0697 4 473 PHD Gene Family AT4G30200 55.777 1.81e-165 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0697 - - gmx:100819331 1504.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0697 13 21189176 21194356 Gso17g0524 17 4801517 4806666 GST