Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0696 ATGGACTCTTGTTCATCACCGCCAAACAACAACTCCCTCGCTTTCTCTCTTTCCAATCACTTTCCCAACCCTTCCTCCTCTCCCCTCTCCCTTTTCCACTCCTTCACCTATCCATCTCTCTCTCTCACAGGAAGCCACACGGCGGATGCACCTCCTGAGCCCATCGCCGGCGGAGGATCGACCAACCTCTCCATATTCACCGGCGCCCCCAAGTTCGAGGACTTTCTGGGCGGTTCCTCCGCAACAGCCACCGCCACCACGTGTGCACCGCCACAGCTTCCGCAGTTCTCCACCGACAACAACAACCACCTGTACGATTCGGAGCTGAAGACAACAATAGCCGCGTGCTTCCCTCGCGCCTTCGCCGCCGAACCAACCACCGAACCTCAGAAACCCTCTCCAAAGAAAACCGTCGACACGTTCGGCCAACGCACCTCCATCTACCGCGGCGTCACCCGACATAGATGGACGGGAAGATACGAAGCTCATCTATGGGACAATAGTTGTAGAAGAGAAGGCCAAAGCAGGAAAGGAAGACAAGTTTACCTGGGTGGTTATGACAAGGAAGATAAGGCAGCCAGGGCTTACGATCTCGCAGCTCTCAAGTACTGGGGTCCAACTACCACCACCAACTTTCCCATTTCCAACTATGAGAAGGAACTGGAGGAGATGAAGAACATGACCAGGCAAGAGTTTGTTGCTTCTCTAAGAAGGAAGAGCAGTGGTTTCTCTAGGGGGGCCTCTATATACAGAGGAGTGACGAGACACCACCAGCATGGCCGATGGCAGGCGAGAATAGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGAACTTTCAGCACCCAAGAAGAAGCTGCTGAGGCCTATGACATTGCTGCTATCAAATTCAGGGGATTAAATGCAGTCACAAACTTTGACATGAGTCGCTACGATGTAAAGAGCATTGCAAATAGCACTCTTCCAATTGGAGGTTTATCTGGCAAGAACAAGAACTCCACAGATTCTGCATCTGAGAGCAAGAGCCACGAGGCAAGCCGATCCGACGAACGAGATCCATCGGCGGCTTCATCCGTGACCTTTGCATCACAGCAACAGCCTTCGAGCTCCACCTTAAGCTTTGCCATACCCATTAAGCAAGACCCTTCAGATTACTGGTCCATCCTGGGGTACCATAATTCTCCCCTTGACAACACTGGCATCAGGAACACTACTAGTGTTACTGCAACTTCTTTTCCATCCTCCAACAATGGCACTACTAGTAGTTTGACACCCTTCCACATGGAATTCTCAAATGCCCCCACAAGTACCGGCAGTGATAACGATGCCGCGTTTTTCAGTGGAGGAGGCATCTTTGTTCAGCAACAAAGTGGTCATGGTAATGGTCATGGAAGTGGAAGCAGTGGTTCCTCCTCTTCTTTAAGCTGTTCAATCCCATTCGCCACGCCCATCTTTTCTCTAAATAGCAATACTAGTTATGAGAACAGTGCTGGTTATGGAAACTGGATTGGACCTACCCTGCACACATTCCAATCCCATGCAAAACCAAGTCTCTTTCAAACGCCAATATTTGGAATGGAATGA 1584 0.5063 MDSCSSPPNNNSLAFSLSNHFPNPSSSPLSLFHSFTYPSLSLTGSHTADAPPEPIAGGGSTNLSIFTGAPKFEDFLGGSSATATATTCAPPQLPQFSTDNNNHLYDSELKTTIAACFPRAFAAEPTTEPQKPSPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARAYDLAALKYWGPTTTTNFPISNYEKELEEMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSTLPIGGLSGKNKNSTDSASESKSHEASRSDERDPSAASSVTFASQQQPSSSTLSFAIPIKQDPSDYWSILGYHNSPLDNTGIRNTTSVTATSFPSSNNGTTSSLTPFHMEFSNAPTSTGSDNDAAFFSGGGIFVQQQSGHGNGHGSGSSGSSSSLSCSIPFATPIFSLNSNTSYENSAGYGNWIGPTLHTFQSHAKPSLFQTPIFGME* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0696 527 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL5 12 526 - -
Gso13g0696 527 Pfam AP2 domain 249 299 IPR001471 GO:0003700|GO:0006355
Gso13g0696 527 Pfam AP2 domain 147 205 IPR001471 GO:0003700|GO:0006355
Gso13g0696 527 CDD AP2 248 309 IPR001471 GO:0003700|GO:0006355
Gso13g0696 527 SMART rav1_2 147 219 IPR001471 GO:0003700|GO:0006355
Gso13g0696 527 SMART rav1_2 249 313 IPR001471 GO:0003700|GO:0006355
Gso13g0696 527 MobiDBLite consensus disorder prediction 336 351 - -
Gso13g0696 527 SUPERFAMILY DNA-binding domain 248 309 IPR016177 GO:0003677
Gso13g0696 527 Gene3D AP2/ERF domain 147 215 IPR036955 GO:0003700|GO:0006355
Gso13g0696 527 Gene3D AP2/ERF domain 249 309 IPR036955 GO:0003700|GO:0006355
Gso13g0696 527 ProSiteProfiles AP2/ERF domain profile. 249 307 IPR001471 GO:0003700|GO:0006355
Gso13g0696 527 CDD AP2 146 215 IPR001471 GO:0003700|GO:0006355
Gso13g0696 527 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12 526 - -
Gso13g0696 527 SUPERFAMILY DNA-binding domain 146 215 IPR016177 GO:0003677
Gso13g0696 527 MobiDBLite consensus disorder prediction 322 364 - -
Gso13g0696 527 PRINTS Ethylene responsive element binding protein signature 148 159 IPR001471 GO:0003700|GO:0006355
Gso13g0696 527 PRINTS Ethylene responsive element binding protein signature 289 309 IPR001471 GO:0003700|GO:0006355
Gso13g0696 527 ProSiteProfiles AP2/ERF domain profile. 147 213 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0696 Gso-Chr13 21158121 21161950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0696 104 395 AP2-EREBP Transcription Factor Family AT5G57390 70.288 7.70e-143 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gso13g0696 AP2 2.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0696 K09285 - gmx:100797828 989.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0696 13 21158121 21161950 Gso17g0525 17 4826912 4830717 GST