Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0683 ATGGAACTTTCACCACAAGAATTCATTTTCCGTTCCCCACTCCCCGATATTCCCATCCCCACACACCTCCCATTGTACTCTTACTGCTTCCAAAAGTTGTCACAGTTCCATGACCGTCCATGCCTCATCGACGGCGACACCAGCGAAACCCTCACCTACGCCGACGTCGATCTCTCCGCTCGCCGCATCTCCGCCGGCCTCCACAAAATCGGCATCTGCCAGGGTGACGTCATCATGCTCGTCCTCCGCAACTGCCCGCAGTTCGCACTCGCCTTCCTGGGCGCCACTCACCGCGGCGCCGTCGTCACCACCGCCAACCCCTTCTACACTCCGGCGGAGCTCGCGAAGCAAGCGATGGCCACGAAAACCAGGCTGGTCATAACGCAATCCGCGTACCTTGAGAAAATCAAGAGTTTCGCGGACGACAGCGATGTCATGGTGATGTGCATTGATGATGATTATTCTTCTGAAAACGATGGCGTTTTGCATTTCTCAACGCTCACCAACGCCGACGAAAGGGAAGCCCCTGCCGTTAAGATTAACCCTGACGACCTCGTTGCGCTTCCGTTTTCTTCTGGCACGTCTGGGCTCCCCAAGGGGGTTATGTTATCGCATGAAAACTTGGTTACCACGATATCGCAGTTAGTTGACGGCGAAAACCCGCACCAGTACACGCACAGCGAGGATGTGTTACTCTGTGTGCTGCCTATGTTTCACATCTATGCGCTCAATTCTATTTTGCTCTGCGGGATTCGATCTGGTGCGGCTGTACTTATTGTGCAAAAGTTTGAGATCACTACTCTGTTTGAGCTCATCGAGAAGTACAAGGTGACGGTTGCGTCGTTTGTTCCTCCCATCGTTTTGGCGTTGGTTAAGAGCGGAGAGACTCATCGCTACGACCTGTCGTCTATTCGCGCTGTGGTCACCGGTGCGGCACCGTTGGGAGGGGAACTCCAAGAAGCCGTTAAGGCTAGGCTACCACACGCTACTTTTGGACAGGGATATGGGATGACAGAAGCAGGACCACTTGCCATTAGCATGGCATTTGCAAAAGAACCCTCGAAGATTAAACCAGGTGCATGCGGAACCGTTGTGAGAAACGCTGAGATGAAAATCGTGGATACAGAAACGGGTGATTCACTTCCAAGAAACAAATCCGGAGAAATTTGCATAAGAGGGGCAAAGGTCATGAAAGGATATCTAAATGACCCAGAGGCTACAGAGAGAACTATAGACAGAGAAGGATGGTTACACACAGGAGATATTGGTTTCATTGATGATGATAATGAACTCTTCATTGTTGATCGGTTAAAGGAATTGATCAAATACAAAGGATTCCAAGTAGCTCCTGCTGAGCTCGAAGCTTTGTTGATTGCTCACCCAAACATTTCTGATGCTGCCGTTGTAGGTATGAAAGATGAAGCTGCAGGAGAAATTCCAGTTGCATTTGTTGTAAGGTCAAATGGTTCTGAGATTACCGAGGATGAAATAAAGACATACATTTCACAACAGGTGGTATTTTACAAGAGAATAGGTAGAGTTTTCTTCACGGACTCTATTCCTAAAGCACCCTCCGGCAAAATTCTGCGAAAGGTATTAACTGCAAGACTTAACGAAGGTTTGGTGGTGGCCAATTAG 1638 0.4933 MELSPQEFIFRSPLPDIPIPTHLPLYSYCFQKLSQFHDRPCLIDGDTSETLTYADVDLSARRISAGLHKIGICQGDVIMLVLRNCPQFALAFLGATHRGAVVTTANPFYTPAELAKQAMATKTRLVITQSAYLEKIKSFADDSDVMVMCIDDDYSSENDGVLHFSTLTNADEREAPAVKINPDDLVALPFSSGTSGLPKGVMLSHENLVTTISQLVDGENPHQYTHSEDVLLCVLPMFHIYALNSILLCGIRSGAAVLIVQKFEITTLFELIEKYKVTVASFVPPIVLALVKSGETHRYDLSSIRAVVTGAAPLGGELQEAVKARLPHATFGQGYGMTEAGPLAISMAFAKEPSKIKPGACGTVVRNAEMKIVDTETGDSLPRNKSGEICIRGAKVMKGYLNDPEATERTIDREGWLHTGDIGFIDDDNELFIVDRLKELIKYKGFQVAPAELEALLIAHPNISDAAVVGMKDEAAGEIPVAFVVRSNGSEITEDEIKTYISQQVVFYKRIGRVFFTDSIPKAPSGKILRKVLTARLNEGLVVAN* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0683 545 SUPERFAMILY Acetyl-CoA synthetase-like 15 539 - -
Gso13g0683 545 ProSitePatterns Putative AMP-binding domain signature. 188 199 IPR020845 -
Gso13g0683 545 Gene3D - 438 541 IPR045851 -
Gso13g0683 545 Pfam AMP-binding enzyme 32 443 IPR000873 -
Gso13g0683 545 CDD 4CL 19 533 - -
Gso13g0683 545 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 5 537 - -
Gso13g0683 545 Pfam AMP-binding enzyme C-terminal domain 452 527 IPR025110 -
Gso13g0683 545 Gene3D - 4 437 IPR042099 -
Gso13g0683 545 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 5 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0683 Gso-Chr13 21022945 21029944 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0683 7 505 Monolignol Biosynthesis Gene Families AT1G51680 64.286 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0683 K01904 - gmx:100810418 1077.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0683 13 21022945 21029944 Gso17g0541 17 4988173 4991342 GST