Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0682 ATGAATTTCCATAACCCCAATTATTCTCTTCACCTACGCCAACCAGATGATGAGAACCATCTCAACCTAGATCTTCTTCTTGAGCCATCTTCTTCTTCATCATCTTCACCTTCACCTATTAGTCCCGTTGAGCCACGGATATTCTCATGCAACTATTGCCAGAGAAAGTTCTATAGCTCTCAAGCACTAGGGGGTCATCAAAATGCTCACAAGCTTGAAAGGACACTGGCCAAGAAGAGCAGGGAACTGAGTTCAAACATGCAATCTTATGGATCACCGGAGCAAAGATCAAACTTTGGTGCTTCACACCATCTTGGTCGTGCTCTTGGGGTTGTGGATAACCAAGGACAAAGTTATGCGAGGCTTGGTGGAAGAAAAGAGTTCAGTTATGGTTCCAAGGAAGGGGTAGGGGTGGCTTCTTCCTGGTCAAGGGGTTATACTTCTGAACATGTTCAGGAGGATATGGGCCAACTGGACTTGTCGTTGAGGCTTTGA 495 0.4566 MNFHNPNYSLHLRQPDDENHLNLDLLLEPSSSSSSSPSPISPVEPRIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSRELSSNMQSYGSPEQRSNFGASHHLGRALGVVDNQGQSYARLGGRKEFSYGSKEGVGVASSWSRGYTSEHVQEDMGQLDLSLRL* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0682 164 ProSiteProfiles Zinc finger C2H2 type domain profile. 48 75 IPR013087 -
Gso13g0682 164 MobiDBLite consensus disorder prediction 81 99 - -
Gso13g0682 164 ProSitePatterns Zinc finger C2H2 type domain signature. 50 70 IPR013087 -
Gso13g0682 164 MobiDBLite consensus disorder prediction 76 100 - -
Gso13g0682 164 Gene3D Classic Zinc Finger 36 103 - -
Gso13g0682 164 SUPERFAMILY beta-beta-alpha zinc fingers 45 75 IPR036236 -
Gso13g0682 164 PANTHER BNAC02G44440D PROTEIN 5 164 - -
Gso13g0682 164 PANTHER ZINC FINGER PROTEIN JAGGED 5 164 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0682 Gso-Chr13 21008516 21009783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0682 4 164 C2H2 Transcription Factor Family AT5G57520 46.386 3.22e-28 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso13g0682 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0682 - - gmx:100778014 294.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0682 13 21008516 21009783 Gso17g0543 17 5021491 5022768 GST