Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0672 ATGTGTAATAAAGGGTTTCAATGCTTGAGCCAGTGTGAGAGTGTAATTGATTATAGGCAAGGATTCATCATGGATAGTCCAATTCGATCGCCGGCCACCGGTTCGGGTTCCGGTTCCGGTGAAGATAACCGGCGTGTTAAGTTCTTGTGCAGCTTTCTGGGGAGCATAATGCCTCGCCCCCAAGATGGGAAGCTGCGTTATGTAGGCGGCGAGACACGAATTGTGAGTGTTCACAGGGATATTAGCTATGAAGAGTTGATGGGGAAGATGAGAGAGCTGTATGATGGGGCTGCTGTGTTGAAGTACCAGCAGCCTGATGAGGATCTTGATGCTCTAGTCTCTGTTGTCAATGATGATGATGTGGTTAACATGATGGAGGAGTATGATAAGTTGGGGTCAGGGGATGGATTCACTAGGCTCAGGATTTTTCTGTTTTCGCAATCTGAGCAGGATGGTTCCTCGCATTTCATTGATGGGGATGATTCTGAGAGGAGGTATGTTGATGCATTGAATAGTTTAAACGATGGTTCTGACTTTAGGAGGTTGCAACAAGGGGAGTTTCCTATGATGAGTCCTGTTGAGGATATTCATGTGGTTGCTGATCAGTTCTATAGTCCAATCAGTGTGGAAAGTGGGATTCATAGTCAGAGAAGTGGGGACCTATCTATGTCGCCGTATAATATGCATCATCTCACGGTCCAGCACCCGAAATCTATGGGCCAGAGGTATAATGAAATGGATGCTCCTTGGAATCCTGCCTATTACTCCCCTAGGCACCATGGTCTCCATGACTTTCCATCCTCTCCTTCTGGTACAAGGTACCGAGTGCCATTTCCCGAGTTACCAGATAAGTGCATTGATAGAGTGTCGGAAGAGTATGTGCGACATCACGTAAATCATCATCCTGTGTATGACAATCAACTGCAATATTCTGAAAATGTTATGTGGGTGCCGACTGGAGCAGCACATGGCGAAAAGTCAGCTTTTCCAGGCAATATTCTTCATAGTCCTCATGTTGTTGATGGGAACAGTATATGTGAGCAGTGTCGCATGGGTTTTCATAGAGGTCAACCACATATGGAGCATTCTAATATAAGTAATGGACTTCCACAAGCTGCTAATCCATGTGCAGAATGCCCCCCACCAAATAGGGATACTTTCACAGTGAATGCTGATGCAAAGTTACATCCGGCAATCTATCCCAATGAACCTAATAATGATCATAGGTCTGTTTATAATGATACTCAGAATCACGAGAGAGGATGGGGCTTGCAGCATCCAACTGCTCGGGTTGAGGAATCAAGAGTACATGTCTCTGGATCTGGAAGAATGTGTGATGTTCCTGTTGCAAATTTCTCTCTTGGGCATGGTAGTGTGACTGATGGGTATAACTTGTCTTCCAATTATGTTCACCAGCAGGCTGGACCTGAATTGGGGCCCGAACTGTTCCCTGACCAAACCGTGACTTCTATACCACCTATCCAAATTCCTCCACTGGAAGAGTCCAATGTGCAGTATGGAAATTCACCTTCTCCTTATGGATTAGATTGTAATTACGCTGTGCCCCGTGGTCATCCACCTGGTTTCTGGAGAAACACTCCAGTTCCTGTTCATATTGGACCATCTTATGAGGCTGCTACTTCACCTCAGCCGCTGAATGGTATGATGAATGTGGGATTAATCAGGGGAGAGGGCAGTACAGGATTTTTCATTGGACCAGATAGTCAAAATCATTGGGTTGATTCCTCACAGAAATTAACAGGACATGATGGTACAGCCATCCCAGAATATCCATATGCACATGCTCTGAATCCAGTGCCCCTTGGTCAAGAAAATCAACACCCAGATATTGTAGATACCATTCATCCCCCACAGGACATGAATGCTGGTACCTGCTTGGAACCCTTGCAGCTGCCAAAATCATCTTTTAATATGGTTCAAAATCAACAGGTTTTAAGAGATGATACTCATTTGACTGAAGCAAAGAGTTTTGAATCTAATAGTTTGCTTGGTGAAGGAATAGTGATAAAAATTGAGGACAATGTTGAAAACCCTGGCGCACAGACTATATCTTCTTCAGAGCAAAATAAAATTGCTGAGCATGCATGTGAAGCTGCTGCCTCTGTTGAGTCTAATAATTTAAAGTCAAAACCTGAAGCAGACTGCGTGCATGTTGAGAAACTGGCTGATAAGGACCCTTCTGTTCCAGAAGATTCTAAACATTTAGTTGATCAATTCAGCTTCTTGCCTGAGTTGATTGCTTCTGTAAAAAAGGCTGCATTAGAAGATGCCGAGGAATTGAAAGCTGCAGCTGATGAGCCTGCCAATTCTCAGAATCACAATTCAGATACCAAAGATGAAACAACAAATGAAGTAGAACCAACGAATGCTCATGGTGATTTAGAATTGGACTCTGAAAATGACCATGTAGATACTAATAAAATTGAGTCTACAAGGGCTGAGGAAGAAGCATTTGCTAATGGATTGCAGACTATTAACAATGATGATTTGGAGGAGATCCGTGAGCTTGGTTCTGGAACCTATGGAGCTGTTTATCATGGGAAATGGAAAGGTTCTGACGTTGCCATTAAGAGAATAAAAGCCAGTTGTTTTGCTGGAAGGCCATCTGAAAGAGCAAGATTGATCACAGATTTCTGGAAGGAGGCGTTGATGTTGAGTTCATTGCATCATCCAAATGTTGTCTCCTTTTATGGCATTGTTCGTGATGGCCCCGATGGTTCTTTAGCAACAGTCACAGAGTTCATGATTAATGGATCTTTGAAACAGTTCTTGCATAAGAAAGATAGAACAATAGATCGTCGTAAGAGGCTCATTATAGCCATGGATGCTGCATTTGGGATGGAGTATTTGCATGGAAAAAACATTGTTCATTTTGATTTGAAATGTGAGAATCTATTGGTCAATATGAGAGATCCTCAACGGCCTATCTGCAAGATTGGTGATTTGGGTTTATCAAAGGTTAAACAGCACACTCTAGTGTCTGGTGGAGTACGGGGGACTTTGCCATGGATGGCTCCTGAGCTACTTAGTGGGAAAAGCAATATGGTGTCAGAGAAGATTGATGTCTACTCATTCGGTATAGTCATGTGGGAATTACTCACAGGGAATGAACCCTATGCTGATATGCATTGTGCTTCAATAATAGGAGGAATTGTCAACAACTCTTTACGTCCTCAAATTCCAACATGGTGTGATCCTGAGTGGAAATCTCTAATGGAAAGTTGTTGGGCTTCTGATCCAGTAGAAAGGCCATCATTTTCAGAAATTTCCAAGAAGCTGAGGAGTATGGCTGCTTCAATGAATTTGAAATAG 3333 0.4311 MCNKGFQCLSQCESVIDYRQGFIMDSPIRSPATGSGSGSGEDNRRVKFLCSFLGSIMPRPQDGKLRYVGGETRIVSVHRDISYEELMGKMRELYDGAAVLKYQQPDEDLDALVSVVNDDDVVNMMEEYDKLGSGDGFTRLRIFLFSQSEQDGSSHFIDGDDSERRYVDALNSLNDGSDFRRLQQGEFPMMSPVEDIHVVADQFYSPISVESGIHSQRSGDLSMSPYNMHHLTVQHPKSMGQRYNEMDAPWNPAYYSPRHHGLHDFPSSPSGTRYRVPFPELPDKCIDRVSEEYVRHHVNHHPVYDNQLQYSENVMWVPTGAAHGEKSAFPGNILHSPHVVDGNSICEQCRMGFHRGQPHMEHSNISNGLPQAANPCAECPPPNRDTFTVNADAKLHPAIYPNEPNNDHRSVYNDTQNHERGWGLQHPTARVEESRVHVSGSGRMCDVPVANFSLGHGSVTDGYNLSSNYVHQQAGPELGPELFPDQTVTSIPPIQIPPLEESNVQYGNSPSPYGLDCNYAVPRGHPPGFWRNTPVPVHIGPSYEAATSPQPLNGMMNVGLIRGEGSTGFFIGPDSQNHWVDSSQKLTGHDGTAIPEYPYAHALNPVPLGQENQHPDIVDTIHPPQDMNAGTCLEPLQLPKSSFNMVQNQQVLRDDTHLTEAKSFESNSLLGEGIVIKIEDNVENPGAQTISSSEQNKIAEHACEAAASVESNNLKSKPEADCVHVEKLADKDPSVPEDSKHLVDQFSFLPELIASVKKAALEDAEELKAAADEPANSQNHNSDTKDETTNEVEPTNAHGDLELDSENDHVDTNKIESTRAEEEAFANGLQTINNDDLEEIRELGSGTYGAVYHGKWKGSDVAIKRIKASCFAGRPSERARLITDFWKEALMLSSLHHPNVVSFYGIVRDGPDGSLATVTEFMINGSLKQFLHKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPICKIGDLGLSKVKQHTLVSGGVRGTLPWMAPELLSGKSNMVSEKIDVYSFGIVMWELLTGNEPYADMHCASIIGGIVNNSLRPQIPTWCDPEWKSLMESCWASDPVERPSFSEISKKLRSMAASMNLK* 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0672 1110 Pfam Protein tyrosine and serine/threonine kinase 838 1100 IPR001245 GO:0004672|GO:0006468
Gso13g0672 1110 ProSitePatterns Protein kinases ATP-binding region signature. 843 864 IPR017441 GO:0005524
Gso13g0672 1110 SMART serkin_6 837 1104 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0672 1110 MobiDBLite consensus disorder prediction 784 809 - -
Gso13g0672 1110 Gene3D Transferase(Phosphotransferase) domain 1 923 1109 - -
Gso13g0672 1110 Pfam PB1 domain 61 146 IPR000270 GO:0005515
Gso13g0672 1110 Gene3D Phosphorylase Kinase; domain 1 823 922 - -
Gso13g0672 1110 PANTHER - 22 1110 - -
Gso13g0672 1110 CDD PB1_UP2 49 145 - -
Gso13g0672 1110 CDD STKc_MAP3K-like 843 1100 - -
Gso13g0672 1110 ProSiteProfiles Protein kinase domain profile. 837 1104 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0672 1110 SMART PB1_new 60 145 IPR000270 GO:0005515
Gso13g0672 1110 ProSitePatterns Serine/Threonine protein kinases active-site signature. 962 974 IPR008271 GO:0004672|GO:0006468
Gso13g0672 1110 MobiDBLite consensus disorder prediction 768 809 - -
Gso13g0672 1110 Gene3D - 64 148 - -
Gso13g0672 1110 SUPERFAMILY Protein kinase-like (PK-like) 824 1098 IPR011009 -
Gso13g0672 1110 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 22 1110 - -
Gso13g0672 1110 PRINTS Tyrosine kinase catalytic domain signature 919 932 IPR001245 GO:0004672|GO:0006468
Gso13g0672 1110 PRINTS Tyrosine kinase catalytic domain signature 956 974 IPR001245 GO:0004672|GO:0006468
Gso13g0672 1110 PRINTS Tyrosine kinase catalytic domain signature 1027 1049 IPR001245 GO:0004672|GO:0006468
Gso13g0672 1110 PRINTS Tyrosine kinase catalytic domain signature 1071 1093 IPR001245 GO:0004672|GO:0006468
Gso13g0672 1110 SUPERFAMILY CAD & PB1 domains 62 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0672 Gso-Chr13 20929478 20936141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0672 45 1110 MAP Kinase Kinase Kinase AT5G57610 54.496 0.0 1043
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Gso13g0672 PK_Tyr_Ser-Thr 2.5e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0672 - - gmx:100779077 2247.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0672 13 20929478 20936141 Gso17g0553 17 5083745 5090042 GST
Gso13g0672 13 20929478 20936141 Gso15g1673 15 25572323 25583969 PCT
Gso15g1673 15 25572323 25583969 Gso13g0672 13 20929478 20936141 PCT