Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0671 ATGGGTAGAGCTCCATGCTGTGACAAGGCCAACGTGAAGAAAGGACCATGGTCTCCTGAAGAGGATGCTGCACTCAAAGCCTACATTGAAAAGAATGGAACTGGTGGCAATTGGATTGCTCTTCCTCAGAAAATTGGGCTCAAGAGATGTGGAAAGAGTTGCAGACTTAGGTGGTTAAATTACTTGAGGCCTAATATCAAACATGGTGGATTTACTGAAGAAGAAGACAACATCATCTGCAGCCTGTACATTAGCATTGGAAGCAGGTGGTCCATAATTGCTGCTCAGTTACCTGGAAGGACAGATAACGACATCAAGAACTATTGGAACACTAGATTGAAGAAGAAACTGCTCGGGAGGCGCAAACAATCTAACTTAAGCGCAAAAGACACAAACAATGGAATAGAGGAGAATTCTTATTCAAATGCCCTAAGCTCTTCAGCTCTTGAAAGACTCCAACTGCACATGCAACTTCAAAGCCTTCAAAACCCTTTCTCTTTCTACAACAACCCTGCGCTGTGGCCCAAGTTGCATCCTTTCCAAGAAAAGATGATCCAGAGCCTGCAGTCTTTGAATGATGGCTCTAGCCCTGTGATGCAAAATGCTTTGCCTAATTCCCCACATGTCGAACAAGGACAAAAAGATGAGTTCTGCAAGCCTCAACATGATGGTGCAAAGATCAATAACCCTCAGGTTCATCTTTTGGAGAATATCCCTTTGAGTAACGGTGGAGTTCCCTTTGTTGCTTCTGGGAGTAGTAAGAATCCAATGCACTCAAGCCTTGCACCAAGATCTGAGGCTATTCATGAGCAGACTAATAGTGTGGGATTTCAGCAACTTGGTGCACTGCAGACTGAACTAGATGACATTCTCAACAACAGAATAATGGGCTATGTGCCACACGAAGATCATGATATGGCTGGATTTGATTGTTTCAGAGAGATGAATAGCTCAAAGGACAGCTTGATTTGGTGGTCCAATGATTCTGATACCAAATCAGTATCCTCAAATTCCTGGGATTCATCTGCTACTCCAGCTCTTCTACCACAAGGGATGTTCCAAGATTATGAACTGGGTTACAGTCTGTAG 1089 0.4362 MGRAPCCDKANVKKGPWSPEEDAALKAYIEKNGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRRKQSNLSAKDTNNGIEENSYSNALSSSALERLQLHMQLQSLQNPFSFYNNPALWPKLHPFQEKMIQSLQSLNDGSSPVMQNALPNSPHVEQGQKDEFCKPQHDGAKINNPQVHLLENIPLSNGGVPFVASGSSKNPMHSSLAPRSEAIHEQTNSVGFQQLGALQTELDDILNNRIMGYVPHEDHDMAGFDCFREMNSSKDSLIWWSNDSDTKSVSSNSWDSSATPALLPQGMFQDYELGYSL* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0671 362 CDD SANT 71 113 IPR001005 -
Gso13g0671 362 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gso13g0671 362 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Gso13g0671 362 PANTHER OS09G0431300 PROTEIN 1 318 - -
Gso13g0671 362 CDD SANT 16 62 IPR001005 -
Gso13g0671 362 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Gso13g0671 362 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Gso13g0671 362 Gene3D - 7 68 - -
Gso13g0671 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Gso13g0671 362 SMART sant 67 115 IPR001005 -
Gso13g0671 362 SMART sant 13 64 IPR001005 -
Gso13g0671 362 Gene3D - 70 143 - -
Gso13g0671 362 PANTHER OS09G0431300 PROTEIN 1 318 - -
Gso13g0671 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Gso13g0671 362 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0671 Gso-Chr13 20921021 20922846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0671 1 180 MYB Transcription Factor Family AT5G57620 79.679 1.29e-101 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso13g0671 Myb_DNA-binding 1.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0671 K09422 - gmx:778083 735.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0671 13 20921021 20922846 Gso17g0554 17 5095851 5097709 GST