Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0666 ATGGGAATTGAAAGAGGAGGCTTGAAGGGATTCAGGAGCGGCTGGAGTGTGCCGCCGAAGAAGCCATGCGACTCCTGTAAGCTGGCTTCGGCGGCGCTTTTCTGCCACCTCGATTCCGCGTTTCTCTGCATCGCGTGCGATTCCAAGATTCACTGCGCGAATAAACTCGCGTCGCGCCACGAGCGCGTGTGGATGTGTGAGGTGTGCGAGCAGGCACCCGCTTCTGTCACGTGCAAGGCTGACGCGGCCGCCCTTTGCGTCACGTGCGACTCCGACATCCACTCCGCCAACCCACTCGCGCAACGCCACGAGCGCGTTCCCGTGGAGCCCTTCTTCGATTCCGCGGAATCCATCGTCAAAGCCTCCGCCACCGCCTCTTTCGGGTTCGTCGTCCCCTCCGACGATGGCGCTGCCTCCGACGTCTTCGCCCCCGACGACTCCGACTCCGCCGCCTGGCTCATCCCGAACCCCAATTTCGGGTCCAAACTCATGGACGCCCCCGAAATCAAGTCCAAGGAGATATTCTTCTCTGAAATGGACCCCTTCCTCGATTTTGATTACTCAAACTCCTTCCAAAACCACAACAGCGCCGTAAACGACAGTGTCGTTCCAGTTCAAACCAAACCCTCTCTCGCCCCTCCCCCCATCAACAATCACCAGCACCACCACCAATCTGAGACTTGCTTCGATATCGATTTTTGCCGCTCGAAGCTCTCCTCCTTTAACTACCCATCCCAGTCTCTTAGCCAAAGCGTTTCTTCGTCGTCGCTTGATGTCGGAGTGGTGCCGGACGGGAACACAGTGTCGGACATGTCGTATTCGAGTGGGATTGTGGTGTCGGGTGGACAAGGCGCGACGCAGTTGTGTGGGATGGATCGGGAAGCGAGGGTGCTGCGATACAGAGAGAAAAGGAAGAACCGAAAATTCGAGAAGACGATTCGATACGCATCGCGAAAGGCTTATGCGGAAACCCGGCCCAGGATAAAAGGCCGGTTCGCGAAACGAACCGAAATTGACTCGGATGTGGAGCGTCTCTATAGCCCTGGCGCTGCGGCGCTCATGCTGGACACTCCATACGGTGTCGTACCATCGTTTTAG 1098 0.5747 MGIERGGLKGFRSGWSVPPKKPCDSCKLASAALFCHLDSAFLCIACDSKIHCANKLASRHERVWMCEVCEQAPASVTCKADAAALCVTCDSDIHSANPLAQRHERVPVEPFFDSAESIVKASATASFGFVVPSDDGAASDVFAPDDSDSAAWLIPNPNFGSKLMDAPEIKSKEIFFSEMDPFLDFDYSNSFQNHNSAVNDSVVPVQTKPSLAPPPINNHQHHHQSETCFDIDFCRSKLSSFNYPSQSLSQSVSSSSLDVGVVPDGNTVSDMSYSSGIVVSGGQGATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIDSDVERLYSPGAAALMLDTPYGVVPSF* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0666 365 CDD Bbox1_BBX-like 22 65 - -
Gso13g0666 365 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 8 365 - -
Gso13g0666 365 ProSiteProfiles CCT domain profile. 293 335 IPR010402 GO:0005515
Gso13g0666 365 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 8 365 IPR045281 GO:0009909
Gso13g0666 365 CDD Bbox1_BBX-like 66 108 - -
Gso13g0666 365 SMART bboxneu5 66 108 IPR000315 GO:0008270
Gso13g0666 365 SMART bboxneu5 18 65 IPR000315 GO:0008270
Gso13g0666 365 Pfam CCT motif 293 335 IPR010402 GO:0005515
Gso13g0666 365 ProSiteProfiles Zinc finger B-box type profile. 61 108 IPR000315 GO:0008270
Gso13g0666 365 Pfam B-box zinc finger 63 108 IPR000315 GO:0008270
Gso13g0666 365 ProSiteProfiles Zinc finger B-box type profile. 18 65 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0666 Gso-Chr13 20870727 20872528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0666 1 365 C2C2-CO-like Transcription Factor Family AT5G57660 57.067 6.10e-125 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gso13g0666 zf-B_box 4.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0666 - - gmx:100792197 721.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0666 13 20870727 20872528 Gso17g0560 17 5160432 5162236 GST