Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0665 ATGGTACTTCCCTGCCCTGCCCAAATACTAGTTGGCCTCTCCTTAGACCCAGATGACAGCAAGGAGCTTCTCTCATGGGCAATAAGAGTTCTAGCCAATCCAAATGACACCATTGTGGCTGTGCATGTTCTTGTTGCTGCGGATAAGAAGAAGCGTGTCTCAGTCAGAAGAAGGCAATCACAACTTAGGCAGGCAAAAGCATATGTTATATCTGTGCTTGGAGAATTTGCACAGTCCAGTTGGTCTAAGCAGGTTAATTTGGAGGCCAGGGTGGCACTCAATTCCACAGTTGGTGAAGGTTTAGTGGAGGAAGTCAAGTCCATCAATGCTGACTATCTTCTTATCCGTGGCTCAAGAAACCGAACAAATAAAATTGGAACTTCTAAAGGAATCACCAAGTATTGCTTTGAGCATGCACATGATGGGTGTACAATGGTCTCAGTTGGGAGACGTACAAAGGCAGATCAAAATGCCAATTCAAACTCAACACGTTTTCAAGCAGATAAAAAACAACCAAGTTCAAGATGGTTTAAGAAGAATAACCAATATGGCAAGGGTGCCTCCCCTATTCTGGAGGATTATATATCAGGAACCAAGGCTCAGAACCGTTCACCAAGAACAGTACTAGATGGTCTAGAGGGACAATCGAACAGCACTGAAGATGATACTTTTAGCACTAGGGTCTCAAGCACCACAAATACCCCATCATCGGATTCTAAGAGGCGATCCAAGATAAGAAAACCACAGTTCCCATTCAGGTTCATAGTCTCATTCCTTGCTTCACCATTTAGAAGCAAAAACTTTAGCATATCCAAAAATGAAAAGCGTCAGCCTTTGTTGAAGTGCTTCAGCTATGAACAGATTTCCAATGCTACCAAAGACTTCCACCAAGATAATTTGGTTGGACGAGGTGGGTACTCGGAAGTATACAAAGGTGATCTTTCAGATGGACGAACCATTGCTGTGAAGAGGTTGGCCAAGGACAACAAGGATCCTAACAAGGAAAAAGAGTTCCTTATGGAATTGGGTGTTATTGGACACGTCTGCCATCCTAATACTGCAACTTTAGTGGGCTGCTGCATTGAAAATGGGCTTTATCTGATTTTCAATTACTCTCAAAATGGAAATTTGGCAACTGCACTGCATGGTAAAGCTGGAGATCCACTAGACTGGCCAATCAGATACAAAATTGCCATTGGTGTTGCAAGGGGCCTTCATTATCTTCATAAATGTTGCAAACACCGAATAATTCACCGTGACATCAAAGCTTCTAATGTTCTTCTGGGTCCTGATTATGAACCACAGATTACCGATTTTGGGCTTGCAAAGTGGCTTCCTAACAAGTGGACTCACCATGCTGTGATCCCCGTGGAGGGCACATTTGGATACTTAGCACCAGAGTACTTTATGCATGGAATCGTGGATGAGAAAACAGATGTTTTTGCATTTGGAATTCTACTTTTGGAGATTGTAACTGGACGGAGACCTGTTGATTCTTCAAAGCAAAACCTTCTCCTATGGGCAAAGCCTCTGATGGAATCAGGGAATATTGCTGAGCTAGCTGATCCAAGATTGGAAGGCAAGTATGATGGAGAGCAACTCTATAGGGTAGTGCTAACGGCTTCATACTGTGTGAGACAAACTGCCACGTGGCGTCCCCCAATGAGTGAGGTATTAGAGCTGCTAACTAGTGGCCAAGAGAGTGAGGTTGGAAAGAGCTGGAGGATCCCAAAGTTCACTTCTGATGAATTGGATGATTACTCCATGGTTTTCGGATATGATGTACCCTCAGACGTATCTTTGGAGGATTATCTGTGA 1818 0.4356 MVLPCPAQILVGLSLDPDDSKELLSWAIRVLANPNDTIVAVHVLVAADKKKRVSVRRRQSQLRQAKAYVISVLGEFAQSSWSKQVNLEARVALNSTVGEGLVEEVKSINADYLLIRGSRNRTNKIGTSKGITKYCFEHAHDGCTMVSVGRRTKADQNANSNSTRFQADKKQPSSRWFKKNNQYGKGASPILEDYISGTKAQNRSPRTVLDGLEGQSNSTEDDTFSTRVSSTTNTPSSDSKRRSKIRKPQFPFRFIVSFLASPFRSKNFSISKNEKRQPLLKCFSYEQISNATKDFHQDNLVGRGGYSEVYKGDLSDGRTIAVKRLAKDNKDPNKEKEFLMELGVIGHVCHPNTATLVGCCIENGLYLIFNYSQNGNLATALHGKAGDPLDWPIRYKIAIGVARGLHYLHKCCKHRIIHRDIKASNVLLGPDYEPQITDFGLAKWLPNKWTHHAVIPVEGTFGYLAPEYFMHGIVDEKTDVFAFGILLLEIVTGRRPVDSSKQNLLLWAKPLMESGNIAELADPRLEGKYDGEQLYRVVLTASYCVRQTATWRPPMSEVLELLTSGQESEVGKSWRIPKFTSDELDDYSMVFGYDVPSDVSLEDYL* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0665 605 PANTHER OS08G0249100 PROTEIN 6 595 - -
Gso13g0665 605 ProSiteProfiles Protein kinase domain profile. 295 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0665 605 Gene3D HUPs 5 148 IPR014729 -
Gso13g0665 605 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 8 122 - -
Gso13g0665 605 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672|GO:0006468
Gso13g0665 605 SMART serkin_6 295 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0665 605 MobiDBLite consensus disorder prediction 196 238 - -
Gso13g0665 605 MobiDBLite consensus disorder prediction 155 181 - -
Gso13g0665 605 MobiDBLite consensus disorder prediction 155 184 - -
Gso13g0665 605 Pfam Protein kinase domain 295 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0665 605 Gene3D Transferase(Phosphotransferase) domain 1 373 576 - -
Gso13g0665 605 CDD USP_Like 9 140 - -
Gso13g0665 605 Gene3D Phosphorylase Kinase; domain 1 258 371 - -
Gso13g0665 605 PANTHER OS08G0249100 PROTEIN 6 595 - -
Gso13g0665 605 Pfam Universal stress protein family 9 140 IPR006016 -
Gso13g0665 605 SUPERFAMILY Protein kinase-like (PK-like) 270 562 IPR011009 -
Gso13g0665 605 ProSitePatterns Protein kinases ATP-binding region signature. 301 323 IPR017441 GO:0005524
Gso13g0665 605 MobiDBLite consensus disorder prediction 196 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0665 Gso-Chr13 20857288 20861077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0665 283 601 Trihelix Transcription Factor Family AT1G70460 40.356 1.70e-74 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gso13g0665 Pkinase 2.8e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0665 - - gmx:100782832 1202.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0665 13 20857288 20861077 Gso17g0561 17 5174600 5178383 GST