Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0664 ATGGGATCCTCCATCAGTTGCTGCGGCTCGGAGAGGGTAGAAGAAGTACCAACATCATTTGGCGTAGTTCACAATTCATGGAGAATATTCACATACAAGGAGTTGCATGCGGCCACCAACGGATTCAATGATGATAATAAGCTTGGTGAAGGTGGTTTTGGAAGTGTCTATTGGGGAAGAACCAACGATGGTCTTCAGATAGCGGTGAAGAAACTGAAAGCAATGAACTCAAAGGCAGAGATGGAATTTGCTGTAGAAGTTGAAGTTCTTGGAAGGGTTAGGCACAAAAATTTGCTGGGTCTTAGGGGTTATTGTGTTGGAGATGATCAACGGCTCATAGTCTATGATTACATGCCAAATCTCAGCCTGCTTTCTCATCTGCATGGCCAGTTTGCTGTTGAAGTGCAACTCAACTGGCAAAGGAGAATGAAGATTGCAATTGGCTCTGCGGAAGGCCTTCTGTACTTACACCGTGAGGTCGCACCCCACATCATCCATAGGGACATCAAAGCAAGTAACGTGCTTCTGAATTCAGACTTTGAGCCTCTAGTTGCAGATTTTGGGTTTGCAAAGCTAATCCCAGAAGGAGTTAGCCACATGACTACCCGTGTGAAGGGTACATTGGGATACTTGGCACCTGAATATGCCATGTGGGGAAAAGTCTCCGAAAGTTGTGATGTTTATAGCTTTGGAATTCTTCTCTTAGAACTTGTAACCGGTAGAAAGCCCATAGAGAAGCTCCCAGGTGGGCTCAAAAGAACAATAACTGAATGGGCCGAGCCCCTAATAACCAACGGAAGGCTCAGGGACCTTGTTGATCCAAAACTAAGAGGGAACTTTGATGAAAACCAAGTCAAGCAAACAATCAATGTGGCTGCTCTTTGTGTCCAAAGTGAGCCCGAGAAACGGCCCAATATGAAGCAAGTGGTTAACCTTCTGAAAGGGTATGAATTTGAAGAGAAGAAAGTCACTGCCATGAGAATAGATAGTATCAAGTATAATGAAGAATTATTGGCACTTGATCAACCTAGTGATGATGATGATCATGATGATGCAACAGCTAGCTATGGTGTTTTTAGTGCCATTGAAGTTCAAAAGATGAAGGATCCATACATGCGCGGTGATAACAAGAATATAGGCTAA 1143 0.4383 MGSSISCCGSERVEEVPTSFGVVHNSWRIFTYKELHAATNGFNDDNKLGEGGFGSVYWGRTNDGLQIAVKKLKAMNSKAEMEFAVEVEVLGRVRHKNLLGLRGYCVGDDQRLIVYDYMPNLSLLSHLHGQFAVEVQLNWQRRMKIAIGSAEGLLYLHREVAPHIIHRDIKASNVLLNSDFEPLVADFGFAKLIPEGVSHMTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLELVTGRKPIEKLPGGLKRTITEWAEPLITNGRLRDLVDPKLRGNFDENQVKQTINVAALCVQSEPEKRPNMKQVVNLLKGYEFEEKKVTAMRIDSIKYNEELLALDQPSDDDDHDDATASYGVFSAIEVQKMKDPYMRGDNKNIG* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0664 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Gso13g0664 380 SMART serkin_6 42 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0664 380 Gene3D Phosphorylase Kinase; domain 1 15 117 - -
Gso13g0664 380 PANTHER OS01G0750732 PROTEIN 1 377 - -
Gso13g0664 380 Pfam Protein tyrosine and serine/threonine kinase 45 313 IPR001245 GO:0004672|GO:0006468
Gso13g0664 380 Coils Coil 62 82 - -
Gso13g0664 380 ProSiteProfiles Protein kinase domain profile. 42 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0664 380 SUPERFAMILY Protein kinase-like (PK-like) 26 323 IPR011009 -
Gso13g0664 380 PANTHER PTI1-LIKE TYROSINE-PROTEIN KINASE 1 377 - -
Gso13g0664 380 CDD STKc_IRAK 48 315 - -
Gso13g0664 380 ProSitePatterns Protein kinases ATP-binding region signature. 48 71 IPR017441 GO:0005524
Gso13g0664 380 Gene3D Transferase(Phosphotransferase) domain 1 118 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0664 Gso-Chr13 20852233 20854810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0664 1 313 Trihelix Transcription Factor Family AT1G70460 47.950 5.32e-95 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Gso13g0664 PK_Tyr_Ser-Thr 7.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0664 - - gmx:100783365 747.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0664 13 20852233 20854810 Gso17g0562 17 5180705 5182943 GST