Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0661 ATGGCTAAGTGTTTCTCATCCCTTCTCTCTTGGTTTCTGATTTTTTTGTTTGTGCTGCTACACACACAAACGGGGTATGGTTCAAATGCAACATCAAAGTCGGAAGCGATCATCAACTTGAGAGTAGGGGTACCCCTGAAAAATGGTTTCCCCCAATTTGTGAATGTAGTTTGGGATTCTCATGAAAAGAAGTACAACGTATCTGGATATTGCATAGACGTTTTCTATGCCGTTGTAAACATTTTACCTTTCAAGGTTTCTCTAGATATTCAACCTTTTGAGGTTGAATCACGTGACAATTCTGGAGCTGGATCATACGATTCACTTCTCCAACAAATCCCAGCAAAGTACGATGTTGTGGTAGGGGATATAACAATCCTGGCCAACCGTTCAAACATGGTAGATTTCACACTGCCATATACAGGATCTGGATTTAAAATGCTAGTAACAGTTCAACATGGGAGGCAACAAACCATGTGGATTTTTGTGAAACCCTTCAGCTGGGATCTTTGGTTGAGCATAGTCATCATCTCTACCTTCATAGGGGTCTCCATACTCGTCATGGAAAGAAATGTAAATGCTCCTACTGATCAGGAGGGTTTGCCAAATCGAAAAAAGCTTAGCCCTGCGACAATCTTATGGTTTCCAATTTCACAAGCAATTCTTCCTGAAAGACAAGTAGTGGCCAAGAACTGCTCGAGATTTGTGTTAATGATATGGCTTCTATTGGCGTTCGTGCTCATGCAAAGTTACACTGCAAACTTGACTTCTATATTGACTTTGGATCAGTTAGGACCCAGTTTTTTTAATGTAAATGATCTAAGAAAAGGTGGTTATTATGTTGGATATCAATCTGGGTCTTTCGTTAAAGATGTGTTGGTTCAGCAATTTAAGTTTGATACGTCCAAGCTGAGGCCATATAGCAACAGTGCTGAGTATCATAATGCTTTAAAAACTGGAAGCCAACGTGGTGGTGTTGCAGCTATATTCGATGAAGTGCCTTACCTTAAAGTCTTCCTTCAAGAATACGGATCCAATTACATCATGGCCGGCTCGAGATATAGAAATGATGGCTTTGGTTTTGCATTCCCTTTAAACTCCAATCTCACCACTCACTTTTCGAGAGCCATCTTGAAGGTGACTGAGAGTGAGTTAATGAATGAAATTGAGAGAAAATATTTTGGGAAGAAGGATATTGAAGAAGACTCGTCTGCGGAAATTTCTTCCGCTGCTCCAAGCCTCAACTTTCATAGCTTTGCAGGGCTATTCTTGATTACAGGGATTAGTACTTTATTAGCACTAATGGTCTCAGAAACTGTTATTTGGCGAAGGGTCATTTTGATGGCTAAAGCAATCAGCCAGAGGTATTTGTTCGCCACTCCACCTCCCACCGAAACACGCGTTCATCCAATTCATGATGATTCAATTCGCGGAATAGAGGCCATTTAA 1449 0.4079 MAKCFSSLLSWFLIFLFVLLHTQTGYGSNATSKSEAIINLRVGVPLKNGFPQFVNVVWDSHEKKYNVSGYCIDVFYAVVNILPFKVSLDIQPFEVESRDNSGAGSYDSLLQQIPAKYDVVVGDITILANRSNMVDFTLPYTGSGFKMLVTVQHGRQQTMWIFVKPFSWDLWLSIVIISTFIGVSILVMERNVNAPTDQEGLPNRKKLSPATILWFPISQAILPERQVVAKNCSRFVLMIWLLLAFVLMQSYTANLTSILTLDQLGPSFFNVNDLRKGGYYVGYQSGSFVKDVLVQQFKFDTSKLRPYSNSAEYHNALKTGSQRGGVAAIFDEVPYLKVFLQEYGSNYIMAGSRYRNDGFGFAFPLNSNLTTHFSRAILKVTESELMNEIERKYFGKKDIEEDSSAEISSAAPSLNFHSFAGLFLITGISTLLALMVSETVIWRRVILMAKAISQRYLFATPPPTETRVHPIHDDSIRGIEAI* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0661 482 Pfam Ligand-gated ion channel 397 428 IPR001320 GO:0015276|GO:0016020
Gso13g0661 482 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 481 - -
Gso13g0661 482 Pfam Bacterial extracellular solute-binding proteins, family 3 66 396 IPR001638 -
Gso13g0661 482 SUPERFAMILY Periplasmic binding protein-like II 11 396 - -
Gso13g0661 482 CDD GluR_Plant 40 394 - -
Gso13g0661 482 Gene3D - 159 302 - -
Gso13g0661 482 Gene3D - 340 401 - -
Gso13g0661 482 PANTHER RECEPTOR 3.3, PUTATIVE-RELATED 1 481 - -
Gso13g0661 482 Gene3D - 37 158 - -
Gso13g0661 482 SMART GluR_14 39 396 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0661 Gso-Chr13 20804505 20806700 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0661 40 455 Ion Channels AT2G29110 39.954 5.19e-84 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0661 K05387 - gmx:100811144 941.414