Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0660 ATGGAACAGGAGTACGATGTTGTGGTAGGGGATGTAACAATTCTTGCCAACCGTTCGAATTTCGTAGACTTCACGCTGCCATATACAGGTTCGGGAGTTAAAATGTTGGTACCAGCTCAACATGGGAGGAAACAAACCATGTGGATTTTTGTGAAACCCTTCAGCTGGGATCTTTGGTTGAGCATAGTCATCATCTCTACCTTCATAGGGGTCTCCATACTCATCATGGAAAGAAATGTAGATGCACTTCCTCATCATGAGGATTCTCCAAATCGAACAAAGCTTAGCCCTGCAACCATCTTATGGTTTCCAATTTCCCAAGCCATTCTTCCCGAAAGACAAGTAGTCGTCAAGAACTGCTCGAGATTTGTGTTGATGGTATGGCTTCTATTGGCGTTCGTGCTCATGCAAAGTTACACTGCAAACTTGACTTCTATATTGACCTTGGAACAGTTAAGACCCAGTTTTCCGGGAAAAGGGGATTATTATGTTGGATATCAAACTGGATCTTTCGTTAAAGATGTGTTGGTTAAGCAATTTAACTTTCTCCCATCCAAGCTGAGGCCATATAGCAACAGTGCTGAGTATTATAATGCTTTAAAATCTGGAAGTCAAGGTGGTGGTGTTGCAGCTATATTCGATGAAGTGCCTTACCTTAAAGTATTTCTTCAAGAATACGGATCCAAATCCTCTTACATCTTGGCTGGCCAGACATTTAGAGATGATGGCTTTGGTTTTGCATTCCCTTTAAACTCCAATCTCACGGCTTACTTTTCGAGAGCCATCTTGAAGGTGACTGAAAGTGATTTAATGAAAGAAATTGAGGAAAAATACTTTGGGAAGAATGATGATATTGGAGGAGAAGACCCGTCTGCGGAAATTTCTTCTGCTACTCCAAGTCTCAACTTTCATTGCTTTTCAGGGCTCTTCTTCATTACAGGGATTTCTACTTTATTAGCGCTATTGGTCTCAGAAACTGTTATATGGCAAAAGCCCATTTTGATAGCTAAAGCATACGGTCAGAGGTATTTGTTCACGGCTCCACCTTCTACAAAAACAAGTGTTCCTCCAACTCATGATTCAACCCACGGAATAGACGTCGTTTAA 1107 0.4137 MEQEYDVVVGDVTILANRSNFVDFTLPYTGSGVKMLVPAQHGRKQTMWIFVKPFSWDLWLSIVIISTFIGVSILIMERNVDALPHHEDSPNRTKLSPATILWFPISQAILPERQVVVKNCSRFVLMVWLLLAFVLMQSYTANLTSILTLEQLRPSFPGKGDYYVGYQTGSFVKDVLVKQFNFLPSKLRPYSNSAEYYNALKSGSQGGGVAAIFDEVPYLKVFLQEYGSKSSYILAGQTFRDDGFGFAFPLNSNLTAYFSRAILKVTESDLMKEIEEKYFGKNDDIGGEDPSAEISSATPSLNFHCFSGLFFITGISTLLALLVSETVIWQKPILIAKAYGQRYLFTAPPSTKTSVPPTHDSTHGIDVV* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0660 368 PANTHER RECEPTOR 3.3, PUTATIVE-RELATED 3 364 - -
Gso13g0660 368 Gene3D - 246 279 - -
Gso13g0660 368 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 3 364 - -
Gso13g0660 368 Gene3D - 48 182 - -
Gso13g0660 368 Gene3D - 1 47 - -
Gso13g0660 368 SUPERFAMILY Periplasmic binding protein-like II 2 282 - -
Gso13g0660 368 Gene3D - 229 245 - -
Gso13g0660 368 Pfam Bacterial extracellular solute-binding proteins, family 3 3 281 IPR001638 -
Gso13g0660 368 SMART GluR_14 1 281 IPR001320 GO:0015276|GO:0016020
Gso13g0660 368 Pfam Ligand-gated ion channel 282 315 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0660 Gso-Chr13 20793477 20795546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0660 6 342 Ion Channels AT2G29110 40.884 3.62e-68 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0660 K05387 - gsj:114382124 739.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0660 13 20793477 20795546 Gso17g0565 17 5215566 5217730 GST