Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0653 ATGAATAACCCACTGCCCACAGATTATAGAATTTTGGACTTGCACGCCGTCGTCTCCCACCACTCAATCACCATGCCTTCTCCTTCTGCAGATCAATCACAATCCCAACCAAAACCTAACCCCAACCTCCTTTCCCTCTTCCTCAAGCCCATCATCATGCTCCTTCTCACCTCCCTCTTCTTCCTCTTCCTCGGCTTCGCCGCCTTCCTCCTCCTCAACCTCTTCCTCCTCGGTGGCGCCTTCCACCGCCTTCGCTTCCGCCCCTCCGTTACCTCCGCCCCCGCCTCCTCCATCGGCCTCCCCCCTCGTGATATCAACAACCTCCCCCGCTTTCTGCTCGCCAAAGGATCCGCAAACCGACCCGACTCCCATTGCGTCGTCTGCTTGGACGCCTTCCGCAACGCCCAGTGGTGCCGAAAGCTCGCCGCTTGCGGCCACGTGTTTCACCGCACGTGTGTCGACACGTGGCTCCTCAAGGTCGCCGCATGCCCCACGTGCCGTACACCCGTGCGATTTAATGCCGGAACTACGGTTCATGACCCGCCTCAGCGTTCTGACCAATTTCATACCTGCGGAACTGACTGCACTGCTCTCACCACCCTTTTATAG 609 0.5846 MNNPLPTDYRILDLHAVVSHHSITMPSPSADQSQSQPKPNPNLLSLFLKPIIMLLLTSLFFLFLGFAAFLLLNLFLLGGAFHRLRFRPSVTSAPASSIGLPPRDINNLPRFLLAKGSANRPDSHCVVCLDAFRNAQWCRKLAACGHVFHRTCVDTWLLKVAACPTCRTPVRFNAGTTVHDPPQRSDQFHTCGTDCTALTTLL* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0653 202 ProSiteProfiles Zinc finger RING-type profile. 125 167 IPR001841 -
Gso13g0653 202 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 174 IPR013083 -
Gso13g0653 202 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 25 189 - -
Gso13g0653 202 Pfam Ring finger domain 124 167 IPR001841 -
Gso13g0653 202 PANTHER RING-H2 FINGER PROTEIN ATL56 25 189 - -
Gso13g0653 202 SUPERFAMILY RING/U-box 119 175 - -
Gso13g0653 202 SMART ring_2 125 166 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0653 Gso-Chr13 20649203 20650176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0653 38 201 C3H Transcription Factor Family AT2G18670 41.818 1.65e-29 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0653 - - gmx:102670430 376.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0653 13 20649203 20650176 Gso17g0575 17 5327292 5328294 GST