Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0652 ATGGGTTTTAGGAGTGATGTTTTTGTGTCTCCACCAGAACAGCCACCATATTTTCTCTCAGAGCCTACCCCACCTTTCCCACCAACTGTTCGATCTGATAGTTTCAGTTTCAACGATAGGGCCTTGAAGGTTAGTCCAAGCATCCTTCTGATCATCATAATTCTGGCCATTGTTTTCTTCATTTCTGGTTTGCTGCACCTTCTGGTTAGATTCCTGTGGAGACCCCAAACTAGAGAGCCTGATGAATTGGACAATGTCACTGCTCTCCAAGGCCAATTGCAGCAACTCTTCCACCTCCATGATGCTGGGGTTGACCAGTCCTTCATTGACACCCTCCCTGTGTTCCTCTACAAGGCCATCATAGGACTCAAGAAGTACCCCTTTGACTGTGCCGTTTGTTTGTGTGAGTTTGAGCCTGAGGACAAGCTCAGGTTGCTGCCAAAATGTAGCCACGCTTTTCACATGGAGTGTATTGACACCTGGCTCTTGTCTCACTCTACTTGTCCTCTTTGTAGAGCCACCTTGCTCCCTGAATTCTCTGCAAGCAACGCATGTTCTCCTATTGTTCTTGTCCTTGAATCTGGGAGTAGTGAGAGCTCCAGGGAGATTGTTCCTGAAAGAGAGCCTGCTGCTGCTGCTGTTGGAAGGACTAGTTCGGTTATCACCGCAAATTCTCGCCTTGGTTGCCGTGGAGATAGTGAATTTGGATCAACCCGTGTGGATTTGAAATCAGGTGAGTTGTTTAGTGAAATTCCTGATCCAACAGTGCAAAATGGTGTGGAAAAGGTTGTTACTGTTAAGCTGGGGAAGTTCAGAAGTGTGGATGGTGGAGGTGGAGGTGGAGATGGAGGTGGGGAAGGGACTAGTAGTATCAACAATGTGGATGCTAGAAGGTGTTTTTCTATGGGGTCTTTTGCTTATGTTATGGATGAGAGTTCTTCATTGCAAGTACCTATAAGAACTCCAATCAAGAAGCAATCAAGTAAGAAGAAGTCTGGTTTGCCTTTGACACCAGGGCACAGGCCTGCAATGTCAGAATGTGACTGTGAATCCAGAAGGGATTTCAAGTTTGCAGGGTTTGATGCAACAACTATAGTTGAGGATGATGCTGCTAGTACTGGGGCTACAACTGCAAGCACAACTTGTAATGGGAACAGTGCTGCTGCCATCGGAAGGAGCAGAAAGGAGAGTTTTTCTATATCAAAGATTTGGCTTAGGGGGAAGAAGGATAAGCCAAATGCTGGGGCAGATTCATCTAGAAGGGCTGTTTCGTTTCGATTCCCGGTGAAATCTAGTGTTGTTGCTGCTGCTTCTGGTAGTGCTGATGATGATGATTTGAAGGGCAAGAATTGCAAGTTTGATACAAGGAGTACTATGTCTGAGATGGATATTGGAAAGTGGGAGAATGGAAGAGGGACTGAGTTCGATTATGATGAAGAAAACCAGAGTTGTTATAGTATGGATTCTTCTCAAGCTAGGGCGCCATCTTTTGCTAGAAGGACTTTGCTTTGGCTCACAGGAGGAAGACAGAATAAGGTTGTTCACTCTGCTTCCAACCTCTAG 1563 0.4581 MGFRSDVFVSPPEQPPYFLSEPTPPFPPTVRSDSFSFNDRALKVSPSILLIIIILAIVFFISGLLHLLVRFLWRPQTREPDELDNVTALQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKKYPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRATLLPEFSASNACSPIVLVLESGSSESSREIVPEREPAAAAVGRTSSVITANSRLGCRGDSEFGSTRVDLKSGELFSEIPDPTVQNGVEKVVTVKLGKFRSVDGGGGGGDGGGEGTSSINNVDARRCFSMGSFAYVMDESSSLQVPIRTPIKKQSSKKKSGLPLTPGHRPAMSECDCESRRDFKFAGFDATTIVEDDAASTGATTASTTCNGNSAAAIGRSRKESFSISKIWLRGKKDKPNAGADSSRRAVSFRFPVKSSVVAAASGSADDDDLKGKNCKFDTRSTMSEMDIGKWENGRGTEFDYDEENQSCYSMDSSQARAPSFARRTLLWLTGGRQNKVVHSASNL* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0652 520 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 13 418 - -
Gso13g0652 520 SUPERFAMILY RING/U-box 108 179 - -
Gso13g0652 520 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Gso13g0652 520 SMART ring_2 130 171 IPR001841 -
Gso13g0652 520 MobiDBLite consensus disorder prediction 322 345 - -
Gso13g0652 520 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 13 418 - -
Gso13g0652 520 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 177 IPR013083 -
Gso13g0652 520 CDD RING-H2_PA-TM-RING 129 172 - -
Gso13g0652 520 Pfam Ring finger domain 129 172 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0652 Gso-Chr13 20636825 20639190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0652 63 520 C3H Transcription Factor Family AT2G18650 44.516 3.25e-102 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0652 - - gmx:100797283 974.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0652 13 20636825 20639190 Gso17g0576 17 5333974 5336301 GST