Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0636 ATGAATCAAAACCAGCTTCAGCCCCTTCCTCTCCTTAGTAGCTTCCTAGGTTCATCTCATGAAGAATCTTTGCTACAAAACCAAAATGAAAATCCTAATAATGCATGCCATGGTCAAGTTGAGGATGTCACAGTGGCCTTACACATAGGCCTCCCTGACCATTCAAGTGGCTCCAATTCCACCAATAATCATGGATTTGTGAATGCCACAACTCAAGTTCCTAACAATTATTGGATACCAACTCAAGAACAGATCCTCATTGGGTTTAGTCATTTCTCTTGTCCTGTGTGTCACAAAACCTTCAACCGCTACAATAATCTTCAGATGCATATGTGGGGACATGGGTCACAGTATCGCAGAGGCCCAGACTCGCTTAAACGAACCCATCCACGGCCGTTGTTGGACCTTCCATGCTACTGTTGCGCAAGAGGGTGCAAGAACAACATCGAGCACGCACGTGCCAAGCCTCTAAAGGATTTTCGCACGCTTCAGACGCACTACAAGAGGAAGCACGGTTCCAAGCCCTTCACGTGCCGCAAGTGTGGCAAGCCTCTGGCCGTGAAAGGTGACTGGCGAACCCATGAGAAAAACTGTGGCAAACGATGGCTTTGTATCTGTGGCTCTGATTTCAAGCATAAGAGGTCCCTCAAAGATCACATCAAAGCCTTTGGATTTGGTCACACCCCTTTTTCTTCTTCTTCTGATGGCATGTAG 714 0.4692 MNQNQLQPLPLLSSFLGSSHEESLLQNQNENPNNACHGQVEDVTVALHIGLPDHSSGSNSTNNHGFVNATTQVPNNYWIPTQEQILIGFSHFSCPVCHKTFNRYNNLQMHMWGHGSQYRRGPDSLKRTHPRPLLDLPCYCCARGCKNNIEHARAKPLKDFRTLQTHYKRKHGSKPFTCRKCGKPLAVKGDWRTHEKNCGKRWLCICGSDFKHKRSLKDHIKAFGFGHTPFSSSSDGM* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0636 237 PANTHER ZINC FINGER PROTEIN WIP2 5 231 IPR043584 GO:0003700|GO:0010468
Gso13g0636 237 Gene3D Classic Zinc Finger 154 226 - -
Gso13g0636 237 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 5 231 - -
Gso13g0636 237 SUPERFAMILY beta-beta-alpha zinc fingers 87 114 IPR036236 -
Gso13g0636 237 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 119 IPR013087 -
Gso13g0636 237 Gene3D Classic Zinc Finger 91 114 - -
Gso13g0636 237 SUPERFAMILY beta-beta-alpha zinc fingers 161 196 IPR036236 -
Gso13g0636 237 SMART c2h2final6 176 196 IPR013087 -
Gso13g0636 237 SMART c2h2final6 92 114 IPR013087 -
Gso13g0636 237 Pfam Zinc finger, C2H2 type 92 111 IPR013087 -
Gso13g0636 237 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0636 Gso-Chr13 20415637 20417775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0636 1 232 C2H2 Transcription Factor Family AT1G34790 57.031 2.51e-98 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso13g0636 zf-C2H2 0.00055 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0636 - - gmx:100795704 496.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1471 14 45627416 45629843 Gso13g0636 13 20415637 20417775 GST