Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0634 ATGGCTTACCCACATTACCGATCACAGTTCGGAGACACAACGTTCACTAAGGTCTTCGTTGGAGGCCTAGCTTGGGAGACTCCAACCGAAGAAATGCGCAAATATTTTGAGCAGTTTGGAGACATTCTTGAAGCTGTCATTATCACTGATAAGAACACAGGAAAATCTAAAGGCTACGGATTCGTAACCTTCCGTGATCCAGAATCAGCTAGAAGGGCATGTACTGATCCAAACCCAGTTATTGATGGAAGAAGAGCAAATTGTAACATTGCTTCTCTAGGAAGACCTAGACCATCACCACCTAGAGGAAGAGGTACATTCCAAGGAGGAGGAGCACCAGGGACGACAGCAGCGTCGTACGGTGGTGTGCCAGCGGCAGGACCACCGCCGGCACTGGCGCCTCCACCACCGCCGCTAGTTTACCCGCCATATGGCTACCCTACCTACACCCCTGATTATGGGTACCACCAAGCCACGATGTATAACCCACAAATTCAGCAACCACAATACTACCACCAACAACTCTATGGACCATCATCTTCCACCATGGGTTCCCCTTATTACTATGGCTATTCTGTGCAAGCACCAAGGGGCACATTCTCTTCAACCCAACCACATCGCTTACCAGCTGGACCCTCCTATCTATACTACCCCACACCCATGGAAGGCTCTTTCCCTGCTTATCGTCCTCCACCTCAATTGCAACAACTTCCAATAAGGCAACCCCCTTCTTCCCCTAGTGATTCACAGACTCAGCAGCGTACCTCCTCCGAGACAGCAGGTGGAGTAGTTATAACTTCAGAAAGTTCAAATACCCAAGGGAGGAACTGA 831 0.497 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRKYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACTDPNPVIDGRRANCNIASLGRPRPSPPRGRGTFQGGGAPGTTAASYGGVPAAGPPPALAPPPPPLVYPPYGYPTYTPDYGYHQATMYNPQIQQPQYYHQQLYGPSSSTMGSPYYYGYSVQAPRGTFSSTQPHRLPAGPSYLYYPTPMEGSFPAYRPPPQLQQLPIRQPPSSPSDSQTQQRTSSETAGGVVITSESSNTQGRN* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0634 276 Gene3D - 3 112 IPR012677 -
Gso13g0634 276 SUPERFAMILY RNA-binding domain, RBD 9 115 IPR035979 GO:0003676
Gso13g0634 276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 74 IPR000504 GO:0003723
Gso13g0634 276 MobiDBLite consensus disorder prediction 240 276 - -
Gso13g0634 276 MobiDBLite consensus disorder prediction 91 131 - -
Gso13g0634 276 PANTHER GEO13361P1-RELATED 1 266 - -
Gso13g0634 276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Gso13g0634 276 SMART rrm1_1 17 89 IPR000504 GO:0003723
Gso13g0634 276 MobiDBLite consensus disorder prediction 225 239 - -
Gso13g0634 276 MobiDBLite consensus disorder prediction 225 276 - -
Gso13g0634 276 PANTHER - 1 266 - -
Gso13g0634 276 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0634 Gso-Chr13 20398299 20403791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0634 12 92 C2H2 Transcription Factor Family AT2G19380 39.506 5.82e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0634 K25006 - gmx:100787086 463.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1470 14 45598110 45603807 Gso13g0634 13 20398299 20403791 GST
Gso13g0634 13 20398299 20403791 Gso4g0863 4 9245681 9250480 PCT
Gso13g0634 13 20398299 20403791 Gso6g0858 6 8155639 8160418 PCT
Gso4g0863 4 9245681 9250480 Gso13g0634 13 20398299 20403791 PCT
Gso6g0858 6 8155639 8160418 Gso13g0634 13 20398299 20403791 PCT