Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0619 ATGACGAACCGTAATGTGAATAACACCCTTGTGGAGTTGGCAATGTCGATTTCAAACACAAGTGCTCTACCTAGAGCTACGGTGCCTGGAATAATGGCCTTGCTTGGTGGGGTTTTGGGCCTACCCCAGAAGAAGCTCTTAATGAAAACTTTGGAAGATGGAAGTGTTAATAAAGGAGGGACCAAAGTTATTAACACATGGATTGATTCAATGAGAGCCTCTTCTCCCACACGAGTCAAATCCACACAAAACCAAGACCCAACAAGTCCTTGGACACTTTACCACCCTTCGGCACTGAGCATGTTTGATCAGATTGTATGTGAGTCCAAAGGAAAGCAGATTGTGACTTTTCTTGACTATGATGGAACTCTCTCCCCAATTGTTGCAGATCCAGATAAAGCATACATGAGTAAAAAGATGAGGACCACATTGAAGGACTTAGCAAGGCATTTCCCCACTGCCATCGTGAGTGGAAGGTGCCTGGACAAGGTGTATAACTTTGTAAGATTGGCAGAACTGTACTATGCTGGGAGCCATGGAATGGACATCAAGGGACCAACAAATAAGCGAAGTACTAAGAAGGAAAATGAACAAGTGCTCTTCCAACCCGCTAGTGAATTCTTGCCCATGATCAATGAGGTGTACAACATCTTGGTGGAAAAAACAAAGTCTGTCCCTGGGGCTAAGGTAGAAAATAACAAGTTTTGCTTGTCCGTGCACTTTCGCTGTGTTGACGAAAAGAGTTGGGTGTCATTGGCTGAACAAGTGAGCTTCGTGCTCAACGAGTACCCAAAACTTAAGCTAACTCAAGGGAGAAAAGTGCTTGAGATTCGACCAACCATAAAATGGGACAAGGGCAAGGCTCTTGAATTCTTGCTAGAGTCACTGGGATATGCTAATTCTGATAATGTATTTCCAATCTATATTGGGGATGATCGAACTGATGAAGATGCTTTTAAGGTTTTACGGAGGAGGGGTCATGGGGTTGGGATTCTAGTTTCTAAAATTCCAAAAGAAACTGATGCTTCCTACACTTTGCAAGATCCAACAGAGGTTGGGCAGTTTTTGAGGCATTTGGTGGAGTGGAAAAGAACGAGTTCCCAATACCACAAGTTGTAG 1119 0.4361 MTNRNVNNTLVELAMSISNTSALPRATVPGIMALLGGVLGLPQKKLLMKTLEDGSVNKGGTKVINTWIDSMRASSPTRVKSTQNQDPTSPWTLYHPSALSMFDQIVCESKGKQIVTFLDYDGTLSPIVADPDKAYMSKKMRTTLKDLARHFPTAIVSGRCLDKVYNFVRLAELYYAGSHGMDIKGPTNKRSTKKENEQVLFQPASEFLPMINEVYNILVEKTKSVPGAKVENNKFCLSVHFRCVDEKSWVSLAEQVSFVLNEYPKLKLTQGRKVLEIRPTIKWDKGKALEFLLESLGYANSDNVFPIYIGDDRTDEDAFKVLRRRGHGVGILVSKIPKETDASYTLQDPTEVGQFLRHLVEWKRTSSQYHKL* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0619 372 Pfam Trehalose-phosphatase 117 349 IPR003337 GO:0003824|GO:0005992
Gso13g0619 372 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 372 - -
Gso13g0619 372 SUPERFAMILY HAD-like 117 363 IPR036412 -
Gso13g0619 372 TIGRFAM T6PP: trehalose-phosphatase 112 360 IPR003337 GO:0003824|GO:0005992
Gso13g0619 372 CDD HAD_TPP 117 353 - -
Gso13g0619 372 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 117 326 IPR006379 -
Gso13g0619 372 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 372 IPR044651 GO:0004805|GO:0005992
Gso13g0619 372 Gene3D - 222 371 IPR023214 -
Gso13g0619 372 Gene3D - 114 199 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0619 Gso-Chr13 20141192 20144181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0619 110 359 Trehalose Biosynthesis Gene Families AT1G70290 27.509 5.00e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0619 K01087 - gmx:100792915 747.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1440 14 44820389 44823476 Gso13g0619 13 20141192 20144181 GST
Gso13g0619 13 20141192 20144181 Gso4g0894 4 9695606 9698451 PCT
Gso13g0619 13 20141192 20144181 Gso6g0883 6 8426108 8429126 PCT
Gso4g0894 4 9695606 9698451 Gso13g0619 13 20141192 20144181 PCT
Gso6g0883 6 8426108 8429126 Gso13g0619 13 20141192 20144181 PCT