Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0617 ATGGCAGCTACGATGAATTTCTACAACGAAACATCACAACAAGTTCAGTCAGATCCATTCAGAGGAGAGCTCATGGAAGTTCTAGAACCTTTTATGAAAACTTGTCCTTCCTCAACTCCCTCTATTCTCTCCTCAGATTCACCATCACCTTCCTCTTACTCTCCTTTACTACCTCCACACCCCAGTTTCTCCACATACACCCCCTCTGCCTACTTATTCCAAAACCAACAACCCTTAATAGGCTTTGAGCAACAACCAAGTTCCCTTCTCGGGCTCAACCACCTAAGCACGTCTCAGATTTCCCAGATCCAAGCCCAAGCCCAAGCCCAGAACTCGCTCTCTCTTAATTTCTTGGGCCCGAAGCCCGTTCCTATGAAGCACGTTGGTGGGCCGGCGAAGCCCACGAAGCTGTACCGGGGCGTGAGGCAGAGGCATTGGGGGAAGTGGGTGGCGGAGATAAGGCTACCGAAGAACCGAACCAGGCTTTGGCTCGGAACCTTCGACACAGCCGAGGAAGCCGCTTTGGCTTACGACAAAGCCGCGTACAGGCTCCGAGGCGACTTGGCGAGGCTGAACTTCCCGAACCTGAAAGGCTCGTGCCCCGGCGAGGAGTACAAGCCTATGCAGGCTGCGGTGGACGCTAAGCTCGACGCAATCTGCGCGAACTTGGCGGAAATGCAGAAGCAAGGGAAGAACGAGAAGGGTGCCAGGTCGGGGAAGAAGTCGAAGCAAGGTCCGAACCTGGAGGCGAAGCCCGAACCTGAAGCTTCGGGTTCCGGTGCTGCTGCTCTGTCTCCTGAAAGTGAGGGTTCTGCGGATTCTTCTGCTTTGTCTGATCTTACCTTTGATGTAACCGAGCCGCAATGGGAGGATGCTTCAGCACATTTTAATTTGCAAAAGTTTCCTTCTTATGAGATCGATTGGGATTCTCTCTGA 936 0.5299 MAATMNFYNETSQQVQSDPFRGELMEVLEPFMKTCPSSTPSILSSDSPSPSSYSPLLPPHPSFSTYTPSAYLFQNQQPLIGFEQQPSSLLGLNHLSTSQISQIQAQAQAQNSLSLNFLGPKPVPMKHVGGPAKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYRLRGDLARLNFPNLKGSCPGEEYKPMQAAVDAKLDAICANLAEMQKQGKNEKGARSGKKSKQGPNLEAKPEPEASGSGAAALSPESEGSADSSALSDLTFDVTEPQWEDASAHFNLQKFPSYEIDWDSL* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0617 311 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 310 - -
Gso13g0617 311 MobiDBLite consensus disorder prediction 228 283 - -
Gso13g0617 311 SMART rav1_2 137 200 IPR001471 GO:0003700|GO:0006355
Gso13g0617 311 MobiDBLite consensus disorder prediction 230 248 - -
Gso13g0617 311 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 1 310 - -
Gso13g0617 311 MobiDBLite consensus disorder prediction 268 282 - -
Gso13g0617 311 Pfam AP2 domain 138 186 IPR001471 GO:0003700|GO:0006355
Gso13g0617 311 Gene3D AP2/ERF domain 137 195 IPR036955 GO:0003700|GO:0006355
Gso13g0617 311 PRINTS Ethylene responsive element binding protein signature 138 149 IPR001471 GO:0003700|GO:0006355
Gso13g0617 311 PRINTS Ethylene responsive element binding protein signature 160 176 IPR001471 GO:0003700|GO:0006355
Gso13g0617 311 SUPERFAMILY DNA-binding domain 137 194 IPR016177 GO:0003677
Gso13g0617 311 CDD AP2 136 196 IPR001471 GO:0003700|GO:0006355
Gso13g0617 311 ProSiteProfiles AP2/ERF domain profile. 137 194 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0617 Gso-Chr13 20089184 20091007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0617 1 311 AP2-EREBP Transcription Factor Family AT1G78080 50.145 5.06e-85 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso13g0617 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0617 K09286 - gmx:100802961 568.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1438 14 44783594 44785396 Gso13g0617 13 20089184 20091007 GST
Gso13g0617 13 20089184 20091007 Gso4g0897 4 9744456 9746204 PCT
Gso13g0617 13 20089184 20091007 Gso6g0885 6 8442519 8444202 PCT
Gso4g0897 4 9744456 9746204 Gso13g0617 13 20089184 20091007 PCT
Gso6g0885 6 8442519 8444202 Gso13g0617 13 20089184 20091007 PCT