Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0595 ATGAACTCTTCATCAACTCAACTAGTCCTCACGAAAAGGATGGGTATATATGACCCATTCCATCAAGTGAACATGTGGGGGGACAGCTTTAAAATTGATGGAAGCTTGAACTCAATTGCTCCCCAAATGTTAATGATTAAGCCTAGCATGCAGAACAAGTCTGAATGTACTCCTCACGAATCAAGGGAACCTTCTGGAGATGATCAAGAGACTAATGAAAAAGCTGATACTAAGGCACTAAGACGTCAAGCTCAAAATCGCGAGGCTGCTCGGAAATGTCGGCTGCGGAAGAAGGCTTATGTTCAACAATTAGAAACAAGCCGTGTGAAGCTCATGCAATTGGAGTTGGAGATTGAGAAAGCAAGAAAGCAGCAGGGTATGTACATACGTAGTGCACTAGATGTCAGCTATATGGGATCATCCGGAACAATTAACCCAGGGATAACTTTGTTTGAACTTGAATATGCACAATGGATTGAAGAGCAAGATAGACAGAATCAAGAACTGAGAAATACATTACAAACTCAAGCATCTGAAATGCAGCTTCATCTACTTGTTGAGAGTTGCTTGAGCCACTACTCAAATCTTTTCAGAATGAAAGCAGAAGCTGCAAAGGCTGATGTCTTCTATTTAATCTCTGGTGCATGGAAAGCATCAGTGGAACGCCTTTTTCTTTGGATTGGAGGATCCCGTCCATCACAACTTCTAAATATCATTGCACCACAGCTTGAGCCTTTGACTGATCAACAAATTGTGAGCATTAACAACCTCCGGCTTTCATCTCAGCAAGCTGAAGATGCTCTTTCACTAGGATTGGACAAACTCCAGCAGAGTCTGGTCCACAACATACCATCAGATCCATTGGCTGTAGGACACTACGGGTTTGAGATAGCTGCTGCCATGGAAAAAGGTGAAGCACTAGAACGTTTTGTAAACCAGGCAGATCACCTTAGGCAACAAACTCTGATTCACATGTCTCGGATCCTGACAACTGCTCAAGCTGCTAAAGGCTTGCTGGCTATGGGAGAATACTTTCATCGTCTTCGCACCCTTAGTTCTTTATGGACTGCTCGTTCATGTGATCCTTCCTTTCCCACTCAACTCTCAAACTGA 1113 0.4322 MNSSSTQLVLTKRMGIYDPFHQVNMWGDSFKIDGSLNSIAPQMLMIKPSMQNKSECTPHESREPSGDDQETNEKADTKALRRQAQNREAARKCRLRKKAYVQQLETSRVKLMQLELEIEKARKQQGMYIRSALDVSYMGSSGTINPGITLFELEYAQWIEEQDRQNQELRNTLQTQASEMQLHLLVESCLSHYSNLFRMKAEAAKADVFYLISGAWKASVERLFLWIGGSRPSQLLNIIAPQLEPLTDQQIVSINNLRLSSQQAEDALSLGLDKLQQSLVHNIPSDPLAVGHYGFEIAAAMEKGEALERFVNQADHLRQQTLIHMSRILTTAQAAKGLLAMGEYFHRLRTLSSLWTARSCDPSFPTQLSN* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0595 370 ProSiteProfiles DOG1 domain profile. 148 358 IPR025422 GO:0006351|GO:0043565
Gso13g0595 370 Coils Coil 97 124 - -
Gso13g0595 370 MobiDBLite consensus disorder prediction 56 89 - -
Gso13g0595 370 Pfam Seed dormancy control 166 240 IPR025422 GO:0006351|GO:0043565
Gso13g0595 370 Pfam bZIP transcription factor 76 112 IPR004827 GO:0003700|GO:0006355
Gso13g0595 370 SMART brlzneu 74 141 IPR004827 GO:0003700|GO:0006355
Gso13g0595 370 Coils Coil 159 179 - -
Gso13g0595 370 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700|GO:0006355
Gso13g0595 370 PANTHER FACTOR TGA7, PUTATIVE-RELATED 14 362 - -
Gso13g0595 370 MobiDBLite consensus disorder prediction 51 89 - -
Gso13g0595 370 Gene3D - 77 129 - -
Gso13g0595 370 PANTHER TRANSCRIPTION FACTOR TGA9 14 362 - -
Gso13g0595 370 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 111 IPR004827 GO:0003700|GO:0006355
Gso13g0595 370 SUPERFAMILY Leucine zipper domain 78 111 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0595 Gso-Chr13 19594823 19600156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0595 2 363 Calmodulin-binding Proteins AT1G77920 54.521 2.02e-134 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso13g0595 DOG1 2.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0595 K14431 - gmx:100526976 729.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1408 14 43670060 43675608 Gso13g0595 13 19594823 19600156 GST
Gso13g0595 13 19594823 19600156 Gso6g0905 6 8683561 8688464 PCT
Gso6g0905 6 8683561 8688464 Gso13g0595 13 19594823 19600156 PCT