Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0592 ATGTCTCCGCCGCAGCCCAGCCGCGTCGACCCCAAAATCTGGCGGGCATGTGCCGGCGCCGCCGTGCAAATCCCCAAGCTCCATTCTAGGGTTTACTACTTTCCCCAGGGTCACATGGAGCATGCCTCTCCCTCGCATTACCTCAGCCCTCTCATCCGCTCTCTCCCCTTCGTCCCCTGCCACGTGTCGTCCCTCGATTTCCTCGCCGATCCTTTCTCCGACGAGGTCTTCGCCAAGTTCCTCCTCACTCCCCTCTCACAATCACAACAACAACCTTTCCAAAACGACAACAAGGAGGCTCGGAACGACGATGACGATGAGGACCGCGAGAACAACGGCGTCGTTTCGTTCGCGAAGATCCTCACTCCCTCCGACGCCAACAACGGCGGCGGCTTCTCCGTGCCGCGCTTCTGCGCCGACTCGTGCTTCCCTCCGCTCGACTTCCGCGCCGATCCGCCTGTCCAGCTCCTCTCCGTCGCCGACATCCACGGCGTCGAGTGGCGCTTCCGCCACATCTACCGCGGCACGCCGCGCCGCCACCTCTTCACCACCGGCTGGAGCAAGTTCGTCAACCACAAGAAGCTCGTCGCCGGCGACACCGTTGTTTTTGTCAAGGACTCCGACGGTAGCGTCTCTGTCGGAATCCGTCGCGCAGCTCGGTTTGCCGCCGCGATCGAGACTCCGCCGCCTGCGGAACGGGAGGGATTTTCGCGGTCCACAACAGGGAGAGTGACCGCGGAGGCCGTGGCGGCCGCCGCGGAGTCCGCGGCGCGAAACGCACCGTTCGAGGTGGTGTATTATCCGAGGACCGGCTTTGCGGATTTTGTGGTGAGTGCTGAGGTTGTGGAGGAATCGATGAAGTGCGCGTGGGTAGGTGGAATGAGAGTGAAGATTTCAATGGAGACTGAGGATTCTTCTAGAATGACGTGGTATCAAGGGACTGTGTCTTCTGCATGTGCTTCTGAGAATGGACCTTGGCGCATGCTTCAGGTTAATTGGGATGAACCTGAAGTCTTGCAGAATGCAAAGCAAGTCAGTCCTTGGCAGGTTGAACTTGTTTCCCCCCCATTTGCACTTCATACAGTATTTTCCCCCAACAAAAGGCTTAGAGCTGACCAGGGTTCTGGGCTGTTAAGTAATAGGGAGCAAGATCCCTTCTTTCCTATGCCAGGGTTCTCTAACTCGGCAATGGGACACATGACAGGGTTCCCTAACTCAACAGTGGGACAAATGGATAAACCATTGTTGAGTTATGAAAGTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATATTCTCCATTGAGTTTTTCCAACTTTTTAAATGATAACTCTTATCTGTATATGGGTAGTGGTTCATTTGGGAACAATCCAGTGCAAAGTTTGGGAACTGTGACAACAGAGCTAAACATGAGCAGTTCTCAATCGGATGATTTGTCACCACATAGCCAGAGTAGTTTTCATTCCTTTGGCACAGAGTTTACTGGGACTCGGAACTGTGACACCAAAGTTGGTCCGGGTTCAATTCTGCTGTTTGGTAAGATCATACAGCCTGCTGAAAGTGATTTGCATGATGCTGATTGCATGGAACGTGATGGCAGCAGGGGCAGCAATAAACTGAAGACAGTCGAGGCATGTTATTTCTCAAAGTAG 1656 0.5435 MSPPQPSRVDPKIWRACAGAAVQIPKLHSRVYYFPQGHMEHASPSHYLSPLIRSLPFVPCHVSSLDFLADPFSDEVFAKFLLTPLSQSQQQPFQNDNKEARNDDDDEDRENNGVVSFAKILTPSDANNGGGFSVPRFCADSCFPPLDFRADPPVQLLSVADIHGVEWRFRHIYRGTPRRHLFTTGWSKFVNHKKLVAGDTVVFVKDSDGSVSVGIRRAARFAAAIETPPPAEREGFSRSTTGRVTAEAVAAAAESAARNAPFEVVYYPRTGFADFVVSAEVVEESMKCAWVGGMRVKISMETEDSSRMTWYQGTVSSACASENGPWRMLQVNWDEPEVLQNAKQVSPWQVELVSPPFALHTVFSPNKRLRADQGSGLLSNREQDPFFPMPGFSNSAMGHMTGFPNSTVGQMDKPLLSYESFPAGMQGARHDLYSPLSFSNFLNDNSYLYMGSGSFGNNPVQSLGTVTTELNMSSSQSDDLSPHSQSSFHSFGTEFTGTRNCDTKVGPGSILLFGKIIQPAESDLHDADCMERDGSRGSNKLKTVEACYFSK* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0592 551 ProSiteProfiles B3 DNA-binding domain profile. 117 219 IPR003340 GO:0003677
Gso13g0592 551 SUPERFAMILY DNA-binding pseudobarrel domain 109 223 IPR015300 -
Gso13g0592 551 Gene3D - 291 355 - -
Gso13g0592 551 Pfam Auxin response factor 252 329 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso13g0592 551 Pfam B3 DNA binding domain 117 218 IPR003340 GO:0003677
Gso13g0592 551 MobiDBLite consensus disorder prediction 88 110 - -
Gso13g0592 551 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 5 541 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso13g0592 551 CDD B3_DNA 116 211 IPR003340 GO:0003677
Gso13g0592 551 PANTHER AUXIN RESPONSE FACTOR 5 541 - -
Gso13g0592 551 SMART B3_2 117 219 IPR003340 GO:0003677
Gso13g0592 551 Gene3D - 114 219 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0592 Gso-Chr13 19525785 19530134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0592 1 543 B3 DNA Binding Superfamily AT1G77850 47.856 1.38e-163 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso13g0592 B3 1.1e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0592 - - gmx:100805638 1070.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1403 14 43522421 43525190 Gso13g0592 13 19525785 19530134 GST