Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0588 ATGATGAACCACCTACCTCGAATATTCGGCCATAGAAAGAAGCAAGCCTCCGACAACATGGACCCGACGACAAAGAACAAGAAGAAGAGTAAGAAGAAGCAGCAGCCCAAACTCGAGCGCCGCAACGCCTCCAATCACTTCGAATACGACGCCGGATCGTCGTGCTCCTGGCGCGGCGGCGACGAGAAGGACGCTTCCGTCTCGACGTCGTCGTCGTCGTCGTCGTCGTTGCATTGCACACGCTCGATGGACCTCTACGACCGCACGAGCTTCCGAATTGAGGGCGTGGAGGGCGAGTTCGACCGGATTTGCCGCAGCCTCGGCCTCTCCGGCCCCGAGGACTTCTCCATTCCGGCCGCCGCTTGGGAGGCCATGAAGCTCCGCTGCTCCTCGGACCTGCTTCCTCGCCGCCCCAAGCACGGCGGCGATGAATTCGACGAAGAGGCGAAGGAGAAAGAGGAAATTGAAGTTGTCGAGAGCGAGGATCGAGCTAGGGTTTTGGATGAATGTGTTGTTTCTGCTGAGAGCAGTGGTTGCTGTGGTGGAATCAAGGGTTTTCGGCCTCCGATGCTGAAGCCGCCGCCGGGAGTTAGGGTTTCGGTGGTGGACGACGCCACGTGTTCCACGTGGGATTTGATGCGGGATTTTGCGCCGAATGGGGAAGGAGAAGGGAAGGATAGTTACGTGGAGTTAAATTCTTCTGATGATGAAGATGATCATGAGCGAGTAGAGAAGGAAGAAGAGGAAGATGAAGAAGATGAAGAAGAAGAAGAAGGGGAAGTTGGTGGAGTGAGGGAGAAGAGTGTAGAAGAGGAAAATGCGGCGAGGATTGCGGAAATTGTGGATGATTTTTCAGGGTTTTCTACTCCGAACGAAGATGATTCTTCAAGCACTACCACGGGTCCTAGGTCTAACAGTATATCTCCCAATGGGAGAATCAAGCGTGTTATTACCGCGGGTAATTGGCAGAAGGGTGACCTGTTGGGGCGGGGTTCGTTTGGTTCTGTTTATGAAGGGATTTCTGAAGATGGATTCTTTTTTGCTGTCAAAGAAGTGTCACTACTTGATCAAGGGAATCATGGAAGGCAAAGTGTATATCAACTGGAACAGGAAATTGCACTTTTGAGTCAATTTGAACATGAAAATATAGTTCAATACATTGGCACCGAAATGGATGCATCAAATCTGTATATCTTTATTGAGCTTGTAACCAAAGGTTCCCTTCGAAACCTTTACCAGAGATATAATCTTCGAGATTCTCAAGTATCTGCCTATACAAGACAGATTTTGCATGGCTTAAAGTATCTTCATGAGCGAAATATTGTTCACAGGGATATTAAATGTGCAAATATATTGGTGGATGCAAACGGATCTGTTAAGCTTGCAGATTTTGGATTGGCAAAGGCAACCAAATTGAATGATGTTAAGTCATGCAAGGGAACAGCATTCTGGATGGCCCCAGAGGTTGTAAAAGGGAAAAGCAGAGGTTATGGGCTTCCAGCTGATATATGGAGTCTGGGATGTACTGTGTTGGAGATGTTAACGGGCGAATTTCCATACTCTCACTTAGAATGTATGCAGGCTTTGCTTAGAATCGGAAGAGGTGAGCCACCTCCTGTGCCTGATTCTCTTTCAAGAGATGCACAGGATTTTATCATGCAGTGTCTAAAAGTTAATCCAGATGAACGTCCCGGTGCTGCTCAACTCTTAAACCATACCTTTGTCCAAAGGCCACTACATTCCCAGTCCTCTGGTTCCACATCTCCTTATATTAGAAGGGGTTAA 1785 0.484 MMNHLPRIFGHRKKQASDNMDPTTKNKKKSKKKQQPKLERRNASNHFEYDAGSSCSWRGGDEKDASVSTSSSSSSSLHCTRSMDLYDRTSFRIEGVEGEFDRICRSLGLSGPEDFSIPAAAWEAMKLRCSSDLLPRRPKHGGDEFDEEAKEKEEIEVVESEDRARVLDECVVSAESSGCCGGIKGFRPPMLKPPPGVRVSVVDDATCSTWDLMRDFAPNGEGEGKDSYVELNSSDDEDDHERVEKEEEEDEEDEEEEEGEVGGVREKSVEEENAARIAEIVDDFSGFSTPNEDDSSSTTTGPRSNSISPNGRIKRVITAGNWQKGDLLGRGSFGSVYEGISEDGFFFAVKEVSLLDQGNHGRQSVYQLEQEIALLSQFEHENIVQYIGTEMDASNLYIFIELVTKGSLRNLYQRYNLRDSQVSAYTRQILHGLKYLHERNIVHRDIKCANILVDANGSVKLADFGLAKATKLNDVKSCKGTAFWMAPEVVKGKSRGYGLPADIWSLGCTVLEMLTGEFPYSHLECMQALLRIGRGEPPPVPDSLSRDAQDFIMQCLKVNPDERPGAAQLLNHTFVQRPLHSQSSGSTSPYIRRG* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0588 594 SUPERFAMILY Protein kinase-like (PK-like) 309 582 IPR011009 -
Gso13g0588 594 MobiDBLite consensus disorder prediction 288 312 - -
Gso13g0588 594 MobiDBLite consensus disorder prediction 214 312 - -
Gso13g0588 594 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 86 588 - -
Gso13g0588 594 MobiDBLite consensus disorder prediction 240 260 - -
Gso13g0588 594 Gene3D Transferase(Phosphotransferase) domain 1 319 591 - -
Gso13g0588 594 SMART serkin_6 322 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0588 594 Pfam Protein kinase domain 323 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0588 594 MobiDBLite consensus disorder prediction 11 25 - -
Gso13g0588 594 ProSitePatterns Protein kinases ATP-binding region signature. 328 350 IPR017441 GO:0005524
Gso13g0588 594 ProSiteProfiles Protein kinase domain profile. 322 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0588 594 MobiDBLite consensus disorder prediction 63 79 - -
Gso13g0588 594 Coils Coil 237 260 - -
Gso13g0588 594 MobiDBLite consensus disorder prediction 1 79 - -
Gso13g0588 594 ProSitePatterns Serine/Threonine protein kinases active-site signature. 441 453 IPR008271 GO:0004672|GO:0006468
Gso13g0588 594 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 86 588 - -
Gso13g0588 594 MobiDBLite consensus disorder prediction 261 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0588 Gso-Chr13 19457113 19466583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0588 183 579 MAP Kinase Kinase Kinase AT4G08500 58.500 6.11e-145 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gso13g0588 Pkinase 4.8e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0588 K13414 - gmx:100804388 1081.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1395 14 43285423 43301831 Gso13g0588 13 19457113 19466583 GST
Gso13g0588 13 19457113 19466583 Gso6g0920 6 8818367 8825957 PCT
Gso6g0920 6 8818367 8825957 Gso13g0588 13 19457113 19466583 PCT