Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0579 ATGGATGAAAACCCTAACCCCTCAATCCCTCGCGCCTCTTCCTCTTCCTCTCAGGAATTCCTCAAACAAGTCCAAGCTGCCCTAAAGCGCCATCGCCCTCTCGGTACTACGCAATCGCATAACGTGAGGCCGAAGCGCGCCATGGTGGCTCTACGAAAGGCCACGAACAAGCTCGAGGAGGATCCGCCGTCGATCTCCGACACGTGCACCGGCGAAGGCTGCAAAAATGAGCCCTCTTTGCTGCTGGAATCTCTGAGTGTTGGTGCACACAACAAGGTTCAGTTTTTAACTGAGATCAACAATGCCACTGCACAGCCGCAGGATGAAGCATCGATTGGATTCAATCAACATGAGAAGCACCAAAATATGCAGCAGGCAGAATCTGAAACTAGCTTGGTATCTGAGGGAGGCAAGACTTCTATGCTGCCAAAAAGAACAATAGTTACTCAAGATCATCTGCAGCAATTCAAAAACTTTTTGAGGCAACCAGCTACACAATCTTCTGTAGTGGGATTGCCATGTCCTACAACTACGTCAGTCCATTCAACTTCAGCTCCAATGCTGAATTCTATAACTCATTCGAATTCCTGTATAGATAGTGGTTCACATGTGGCTGCAGAACCTTATGGGAACCTGAATGTTAATTCTCGTCCTATAATTCAAGGGTATGTTAAATCACCAAATATTTCTCTGAAAGACACCAATAGAATGTCAATTGATCAGGTGGCAAGTGCAGTCCAAGATTGTAATTCACCAATTGATGCAGAGTTGACGTTTAAGCAGAGTGACCCATCTAAGGAGCAGCAAGGATGTATGTTAAAGGATACAAGTATTTCAAAGTATACCTCTTGTCATGATGACTTGTTAAGTAAAGGGCAAGAGTCTGCAGCTGTTACCAACATACAGCCTCAGGTTCTCACTTCATCTTCAGATTTGAAATTGGAGTCTTCTAAGTTAGAAAAGCAAGAGAAAAATACAAGTTCTAAAGCATCATCAGGCATTCGAAAGAGGGCCTATGACCCTGAATTGTTTTTCAAAGTCAGTGGCAAGCTTTATCAAAGGCTTGGCAAGATAGGTAGTGGTGGAAGCAGTGAGGTACACAAAGTGATTTCATCAGACTGTACAATCTATGCACTTAAAAAGATAAAATTAAAGGGTCGTGATTATGCCACTGCATATGGCTTTTGTCAAGAGATCGAGTATCTAAATAGGCTGAAAGGAAAGAATAATATTATCCAGCTTATAGATTATGAGGTGACTGACAAGGCTTTGTTTGAGGGAGTCATAAATGGCTCCTTCAGTAATAAGGATGGTAGAGTCAAGGATGATGGATATATATACATGGTACTTGAATACGGGGAAATCGATTTGGCTCATATGTTGTCTCAAAAGTGGAGGGAACTGAATGGAAGCAACCAGACCATAGATGAGAACTGGCTTCGATTTTATTGGCAGCAAATTCTTCAAGCTGTCAACACAATTCATGAAGAACGTATTGTGCATTCTGACTTGAAGCCAGCTAACTTCCTCCTTGTCAAAGGTTCCTTAAAACTGATTGATTTTGGAATAGCCAAAGCAATCATGAGTGATACAACAAACATACAACGCGATTCACAGGTTGGTACACTAAGTTACATGTCACCAGAAGCATTTATGTGCAATGAGAGTGATGCAAGTGGAAACATCATAAAATGTGGTCGGCCATCAGATATCTGGTCCCTCGGCTGCATTCTTTATCAAATGGTTTATGGGAGAACACCCTTTGCAGATTACAGGACATTTTGGGCAAAATTCAAAGTTATAACTGATCCAAATCATGAAATTACGTACGAACCAGTTTCAAATCCATGGCTTCTGGATCTTATGAAAAGGTGTCTAGCATGGCATCGCAATGAAAGGTGGAGAATTCCTCAGCTACTCCAGCATCCTTTTCTAGTTCCTCCAGTTCCATGTCATTCATCTTCGTCCCAAGACCAAACCTTTAAATTGCTGCGACTTATATCTAAAACTTGCATAAATGACCCTGAAGCATCACAGCTCTGTTGTCAGCTCCAACAGCTGCTTGGTAATCCCATCAAATTAACAAGTATGTATTCATTAAATTCGCTAGACCAACAGTGTAAATTGCTGTCCCGAATATCAGAACTTTGTATTCAGCTACAGGAACGATTGACAAAGACTGATAAACAATAG 2193 0.4181 MDENPNPSIPRASSSSSQEFLKQVQAALKRHRPLGTTQSHNVRPKRAMVALRKATNKLEEDPPSISDTCTGEGCKNEPSLLLESLSVGAHNKVQFLTEINNATAQPQDEASIGFNQHEKHQNMQQAESETSLVSEGGKTSMLPKRTIVTQDHLQQFKNFLRQPATQSSVVGLPCPTTTSVHSTSAPMLNSITHSNSCIDSGSHVAAEPYGNLNVNSRPIIQGYVKSPNISLKDTNRMSIDQVASAVQDCNSPIDAELTFKQSDPSKEQQGCMLKDTSISKYTSCHDDLLSKGQESAAVTNIQPQVLTSSSDLKLESSKLEKQEKNTSSKASSGIRKRAYDPELFFKVSGKLYQRLGKIGSGGSSEVHKVISSDCTIYALKKIKLKGRDYATAYGFCQEIEYLNRLKGKNNIIQLIDYEVTDKALFEGVINGSFSNKDGRVKDDGYIYMVLEYGEIDLAHMLSQKWRELNGSNQTIDENWLRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRDSQVGTLSYMSPEAFMCNESDASGNIIKCGRPSDIWSLGCILYQMVYGRTPFADYRTFWAKFKVITDPNHEITYEPVSNPWLLDLMKRCLAWHRNERWRIPQLLQHPFLVPPVPCHSSSSQDQTFKLLRLISKTCINDPEASQLCCQLQQLLGNPIKLTSMYSLNSLDQQCKLLSRISELCIQLQERLTKTDKQ* 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0579 730 CDD PKc_Mps1 350 645 - -
Gso13g0579 730 MobiDBLite consensus disorder prediction 1 22 - -
Gso13g0579 730 Pfam Protein kinase domain 352 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0579 730 ProSitePatterns Protein kinases ATP-binding region signature. 358 380 IPR017441 GO:0005524
Gso13g0579 730 Gene3D Phosphorylase Kinase; domain 1 345 429 - -
Gso13g0579 730 ProSiteProfiles Protein kinase domain profile. 352 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0579 730 SUPERFAMILY Protein kinase-like (PK-like) 347 652 IPR011009 -
Gso13g0579 730 SMART serkin_6 352 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0579 730 PANTHER DUAL SPECIFICITY PROTEIN KINASE TTK 8 695 IPR027084 GO:0004712|GO:0007093|GO:0051304
Gso13g0579 730 Gene3D Transferase(Phosphotransferase) domain 1 466 648 - -
Gso13g0579 730 PANTHER MIXED LINEAGE PROTEIN KINASE 8 695 - -
Gso13g0579 730 ProSitePatterns Serine/Threonine protein kinases active-site signature. 499 511 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0579 Gso-Chr13 19231456 19238101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0579 358 646 MAP Kinase Kinase Kinase AT4G08470 28.763 2.26e-23 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TTK Gso13g0579 Pkinase 3.3e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0579 K08866 - gmx:100795003 1437.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1385 14 42692482 42699408 Gso13g0579 13 19231456 19238101 GST