Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0568 ATGGTTAAGTCAGAGAACAAGATCCAGAGAGAACAACCATCATCATCAAAGCTAATGAGACCATTATCATCATCATCATCATCATCATCAAGTGACAACAACAACAAGAACAAGAAGAAGTACAAGGGAGTGAGAATGAGAAGCTGGGGGTCATGGGTGTCGGAGATTAGAGCACCAAACCAAAAAACAAGAATATGGTTGGGATCTTATTCAACTGCTGAAGCAGCAGCAAGAGCCTATGATGCTGCACTTCTATGCCTCAAAGGCTCCTCAGCCACCAATCTCAACTTCCCTTCTTCAAGCTCCTTCTCACAACACTACATCATCCCTCAAGACACTTCCATGATGTCCCCAAAATCAATCCAAAGAGTTGCTGCTGCTGCTGCCAACAATTTCTTGGACAACAATGCCATTGCTATTAATAATAATGTTACCACCCCACCTTCTCCAATTTCTCCACATTCTCCTCCTCTTGCTTCAACCCCTTCTTCTTCTTCATTTGTATCATCACCATCAATGTCATCATCATCTCCCTCAGACCAAATTGATGATGATGTCTCTCTTCTGACACCATTTGGGGCTTATACTACTGCTGTTGCTACTACTACTATTTGTGATCAAGAAAATGAATCAATGGCTATGATGGAATCATGGTATGGCTTGGAGGGCTTGCAATCTCCAAAGTATGTTGATCAAATGCTAAGTGGGGCATTCTTTGACATTGATTCAACACAGCTGCTTGATGATCTGTATGAAGAAAGTGATATTCGCTTGTGGAGTTTCTGCTGA 789 0.4195 MVKSENKIQREQPSSSKLMRPLSSSSSSSSSDNNNKNKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSATNLNFPSSSSFSQHYIIPQDTSMMSPKSIQRVAAAAANNFLDNNAIAINNNVTTPPSPISPHSPPLASTPSSSSFVSSPSMSSSSPSDQIDDDVSLLTPFGAYTTAVATTTICDQENESMAMMESWYGLEGLQSPKYVDQMLSGAFFDIDSTQLLDDLYEESDIRLWSFC* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0568 262 ProSiteProfiles AP2/ERF domain profile. 40 98 IPR001471 GO:0003700|GO:0006355
Gso13g0568 262 MobiDBLite consensus disorder prediction 144 182 - -
Gso13g0568 262 Gene3D AP2/ERF domain 39 99 IPR036955 GO:0003700|GO:0006355
Gso13g0568 262 MobiDBLite consensus disorder prediction 1 43 - -
Gso13g0568 262 Pfam AP2 domain 40 89 IPR001471 GO:0003700|GO:0006355
Gso13g0568 262 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF014 17 262 - -
Gso13g0568 262 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 17 262 - -
Gso13g0568 262 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Gso13g0568 262 PRINTS Ethylene responsive element binding protein signature 63 79 IPR001471 GO:0003700|GO:0006355
Gso13g0568 262 MobiDBLite consensus disorder prediction 7 34 - -
Gso13g0568 262 MobiDBLite consensus disorder prediction 158 182 - -
Gso13g0568 262 CDD AP2 41 100 IPR001471 GO:0003700|GO:0006355
Gso13g0568 262 SUPERFAMILY DNA-binding domain 40 99 IPR016177 GO:0003677
Gso13g0568 262 SMART rav1_2 40 104 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0568 Gso-Chr13 18983909 18985153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0568 1 261 AP2-EREBP Transcription Factor Family AT1G21910 45.290 6.86e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso13g0568 AP2 5.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0568 - - gsj:114381844 387.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1159 14 26586574 26587868 Gso13g0568 13 18983909 18985153 GST