Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0555 ATGGCTCACAATTACATCGCCACCGATTCACCTCTCTCTCGTCGCATAGTTCGTGCTTTCCTCCACTTCCTCAACTCCGTTGAACCGGGTCCTGGGGTTGATGCTGAGGGGATTGAGGTTGCTAGGGAGTGTTTGGCAGAGGCTTTTAAGCTTAATCAATCTCCTGTGGCTGGTGATGATGTGAAATCTGATTCATTGATTGACATATTCAAGTCTCTTGAAGCTAAAAAGCAATGTGAACCTAGCAAGTCAGACGTTGGTCCTCAGCCGGATTCCGTGGATGCTTCCAGTTCATTCTCGGGTGAGAATCCTGCTCGTGGGAAGAATCATTCTGAGGCGTCGAAATCTACGGATGAAGATTCAACGCAGGGCCCTCATGCTTTTGTATCTAAAGATGAACTGTGCGGACAATTCTTTGCTGCTCTGGAGAAAAATTGCTATTTTTGGAGCAATACTGATGGGAGTGATGACCCAGTGCAACTGGAGAAAGCAAGTTGTTTATTCAATGAGGCTTGTATGGAGTTGGAAAGATCTGGTTGTCACCAGTTTAGTTTGAAGAATTTGGCTGAATCACTAAAAACACTAGGTAACAAGGCAATGCAATCTAAGAAATACTCTGATGCAATTGAGTTGTATAATTGTGCCATTGCAGTCCATGAAAAGAGTGCTGTTTACTACTGCAACAGGGCAGCTGCTTACACCCAGATTAACAAATATACAGAAGCGATCCAAGATTGTCTTAGATCCATTGAGATTGATCCAAACTACAGCAAGGCATATAGTCGTCTGGGTTTGGTTTATTATGCACAAGGAAATTACAGAGATGCTATTCATAAAGGGTTCAGAAAAGCCTTGCAGTTGGATCCAAATAATGAGTCTGTCAAAGAAAATATAAGGGTGGCCGAGCGTAAATTGTTAGAAGAGCAACACCGTGCATATCAAAACCAGAATTCAAGATCATCTCAAGAATTCCCAAACCAATCTGCGCAAGGAGGATCAAGAAGCCACAGCGTGCCACCTCCATTTTCCTCTATGTCATTTAATCCCCGTGATATTGCAAGCATGTTCATGAACATCACAAACCCTACAAATGCACAGCCGCAGGGGTCACATTCTCATCAGGAAAGGCAAGAAGATAGCAATGGTAGTGGAACTAGTGAGCCTGAAATAAGAATTGGGGGAAATATTAGTGTAAACATGGAGGATATGCCAGAGGATATAACAGGGGCCTTACAATCAATGATGGAAATGTTATCTGGGGCTGCACCCCCTGGGCAACCGCAAGATCAAACAAATGGAAGAACAGCACCAAACTAA 1317 0.4351 MAHNYIATDSPLSRRIVRAFLHFLNSVEPGPGVDAEGIEVARECLAEAFKLNQSPVAGDDVKSDSLIDIFKSLEAKKQCEPSKSDVGPQPDSVDASSSFSGENPARGKNHSEASKSTDEDSTQGPHAFVSKDELCGQFFAALEKNCYFWSNTDGSDDPVQLEKASCLFNEACMELERSGCHQFSLKNLAESLKTLGNKAMQSKKYSDAIELYNCAIAVHEKSAVYYCNRAAAYTQINKYTEAIQDCLRSIEIDPNYSKAYSRLGLVYYAQGNYRDAIHKGFRKALQLDPNNESVKENIRVAERKLLEEQHRAYQNQNSRSSQEFPNQSAQGGSRSHSVPPPFSSMSFNPRDIASMFMNITNPTNAQPQGSHSHQERQEDSNGSGTSEPEIRIGGNISVNMEDMPEDITGALQSMMEMLSGAAPPGQPQDQTNGRTAPN* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0555 438 Gene3D Immunoglobulin FC, subunit C 2 76 - -
Gso13g0555 438 ProSiteProfiles TPR repeat profile. 223 256 IPR019734 GO:0005515
Gso13g0555 438 MobiDBLite consensus disorder prediction 312 401 - -
Gso13g0555 438 ProSiteProfiles TPR repeat profile. 257 291 IPR019734 GO:0005515
Gso13g0555 438 PANTHER LD24721P 9 437 - -
Gso13g0555 438 MobiDBLite consensus disorder prediction 413 438 - -
Gso13g0555 438 SUPERFAMILY TPR-like 188 302 IPR011990 GO:0005515
Gso13g0555 438 MobiDBLite consensus disorder prediction 312 371 - -
Gso13g0555 438 Gene3D Tetratricopeptide repeat domain 184 345 IPR011990 GO:0005515
Gso13g0555 438 Pfam TPR repeat 232 271 - -
Gso13g0555 438 Pfam Homodimerisation domain of SGTA 14 71 IPR032374 -
Gso13g0555 438 MobiDBLite consensus disorder prediction 89 107 - -
Gso13g0555 438 MobiDBLite consensus disorder prediction 80 125 - -
Gso13g0555 438 PANTHER LD24721P 9 437 - -
Gso13g0555 438 Coils Coil 291 323 - -
Gso13g0555 438 ProSiteProfiles TPR repeat profile. 189 222 IPR019734 GO:0005515
Gso13g0555 438 SMART tpr_5 257 291 IPR019734 GO:0005515
Gso13g0555 438 SMART tpr_5 189 222 IPR019734 GO:0005515
Gso13g0555 438 SMART tpr_5 223 256 IPR019734 GO:0005515
Gso13g0555 438 MobiDBLite consensus disorder prediction 424 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0555 Gso-Chr13 18580671 18596010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0555 188 287 U-box Gene Family AT3G07370 30.000 2.59e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0555 K16365 - gmx:100799770 887.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1179 14 27390765 27413489 Gso13g0555 13 18580671 18596010 GST