Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0550 ATGCATAGGGCTCTAGTCTATGGATTCGAGATTTCATGGATGCGTTTCGCCTGTGAGGAGGAGGATTGTGGAGACCATGGTTCCTGCTATTTTGACTTTGACAAGCAGAAGCCTCGTTGCGTGGTTTGTTCTGCCTTCCCTTGGGAAAAGGGAAAGAAGTGTGGGATACTGGAACAACTACAAATGGCTGCAGAATTTACATCCGACATTGTTCTTATATCATGGGCATGCAAATTTTTGTTTGGGGTGCCGCTGATTATTGCGTTTGTCATTTACAAATGGCGAAAAAGACATTTATCCATGTATGAAAGTATTGAAAACTATCTAGAACAAAACAACTTGATGCCTATTAGATACTCATACAAGGAAATTAAGAAGATGGGTGGGGGTTTCAAAGACAAGTTGGGCGAAGGAGGATATGGACATGTGTTCAAGGGAAAGTTGCGTAGTGGGCCTAGTGTGGCAACTAAAATATTGGGTAAATTAAAAGGTAATGGACAAGATTTTATCAATGAAGTTGCAACTATTGGAAGAATACATCATCAAAATGTAGTACAATTAATTGGATTTTGTGTTGAGGGATCAAAACGTGCTTTGCTTTATGAATTTATGCCCAATGGATCTCTCGATAAATTTATTTTTTCTAAAGATGGAAGTAAGCATCTAAGCTATGACAAAATATATAATATATCAATTGGAGTTGCTCGTGGGATTTCTTATCTCCACCATGGGTGTGAGATGCAGATTTTGCATTTTGATATCAAGCCCCACAACATCTTACTAGATGAAAATTTTATCCCAAAAATCTCTGACTTTGGATTGGCAAAGCTATATCCAATAGATAATAGCATTGTCACAATGACTGGAGTAAGAGGGACAATTGGGTACATGGCTCCAGAATTATTTTATAAAAATATTGGAGGAATATCCTATAAGGCTGATGTTTATAGTTTTGGAATGCTTTTGATGGAGATGGCAAGTAAAATGAAAAACCTAAATCCTTATGCAGAGCGTTCAAGCCAACTATACTATCCTTTTTGGATTTATAATCATCTTGTAGAAGAGAAAGATATAGAAACGGAAGATGTCACAGAGGAGGAAAAGAAAATAACAAAGAAGATGATCATAGTTGCACTATGGTGCATACAATTGAAACCAAATGATCGCCCATCGATGAACAAGGTAGTGGAAATGCTTGAAGGAGACATTGAGAACCTAGAAATACCCCCAAAGCCTACTCTATATCCACATGAAACGACGATAAGGGATCAAAGAACACCAAACAATATCGAATGA 1296 0.3742 MHRALVYGFEISWMRFACEEEDCGDHGSCYFDFDKQKPRCVVCSAFPWEKGKKCGILEQLQMAAEFTSDIVLISWACKFLFGVPLIIAFVIYKWRKRHLSMYESIENYLEQNNLMPIRYSYKEIKKMGGGFKDKLGEGGYGHVFKGKLRSGPSVATKILGKLKGNGQDFINEVATIGRIHHQNVVQLIGFCVEGSKRALLYEFMPNGSLDKFIFSKDGSKHLSYDKIYNISIGVARGISYLHHGCEMQILHFDIKPHNILLDENFIPKISDFGLAKLYPIDNSIVTMTGVRGTIGYMAPELFYKNIGGISYKADVYSFGMLLMEMASKMKNLNPYAERSSQLYYPFWIYNHLVEEKDIETEDVTEEEKKITKKMIIVALWCIQLKPNDRPSMNKVVEMLEGDIENLEIPPKPTLYPHETTIRDQRTPNNIE* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0550 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 249 261 IPR008271 GO:0004672|GO:0006468
Gso13g0550 431 Pfam Protein kinase domain 132 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0550 431 PIRSF TyrPK_CSF1-R 34 103 - -
Gso13g0550 431 PIRSF TyrPK_CSF1-R 208 427 - -
Gso13g0550 431 PIRSF TyrPK_CSF1-R 176 217 - -
Gso13g0550 431 MobiDBLite consensus disorder prediction 409 431 - -
Gso13g0550 431 PANTHER RUST RESISTANCE KINASE LR10-RELATED 68 423 IPR045874 GO:0004672
Gso13g0550 431 ProSiteProfiles Protein kinase domain profile. 129 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0550 431 Gene3D Transferase(Phosphotransferase) domain 1 204 408 - -
Gso13g0550 431 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 68 423 - -
Gso13g0550 431 SMART serkin_6 129 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0550 431 SUPERFAMILY Protein kinase-like (PK-like) 114 400 IPR011009 -
Gso13g0550 431 Gene3D Phosphorylase Kinase; domain 1 103 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0550 Gso-Chr13 18499191 18502275 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0550 74 423 Receptor kinase-like Gene Family AT5G38280 46.667 7.03e-110 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gso13g0550 Pkinase 4.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0550 - - gmx:100781031 676.396