Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0543 ATGTCCGATTCGAAGGTCGAAACCATCGCCAGATTAGCCCAATGGAAAATCGACAACTTCGGACCCTGCTCCTTCAAGAGATCAGATCCTTTCAAGCTCGGAATTTGGAACTGGTTCATGTCCATAGAGAGGAACAGGTACCTCTACATACACATCTTTCCAGAGCCTTCTCGGCTTTCTAAGGAACAGCCACCCGTGGCGCGCTTCATCCTGCGAGTCTCCAATAGCTCTGGCCCTACCCGCAAAGTTTACATTTCCCCTGTTCATGAAAGGGTTCTTCGGACAAGTGAGGACTTTGTCTGGCCTGTTGATACTGCATTCCTTGGTCGCTTCGTTATTGATATTGAGTTTCTTGACTTGAGGACCTGCCCTGTGAATGGTGAAACCAGATCTGTTTGGCCATCTGATGGAAAACTGCAAACTGTTGCAGCTCAAAGCACTCTTCGATGCCTGTCTCACATGCTTGATGAGGCTATACATGCTGACCTCACCATTATCACCGCAGATGGTACTCTGAGGGCTCATAAGGCAGTTTTATCTGCTAGTTCTACTGTGTTGCATAGCTTGTATCTTGACAATGGTGATGAAAAAGAGACATCTACTATCAACATGGAAGATATGTCTCAAGAGTCCTGCATGGCCCTTCTGAGTTACTTGTACGGCACTATAAAACAAGAAGATTTCTGGAAACACAGGCTTGCATTGCTTGGAGCAGCCGATAAATACGAGATTGGAGATCTTAAAGATGCCTGTGAGGAAAGCCTACTGGAAGATCTTAACTCGGGAAATGTTCTGGATAGGTTAAATGATGCTTGGCTTTACCAGTTGCAAGCGTTAAAGAAAGGATGTTTCTCATACTTATTTTATTATGGTAAGATTTATGATGTTAGAGACGAAATGGATACCTTTTTCCGACATGCAGATAGGGAGCTAATGCTGGAGATGTTTCAGGAAGTGCTTACAATTTCGAAATAG 975 0.4431 MSDSKVETIARLAQWKIDNFGPCSFKRSDPFKLGIWNWFMSIERNRYLYIHIFPEPSRLSKEQPPVARFILRVSNSSGPTRKVYISPVHERVLRTSEDFVWPVDTAFLGRFVIDIEFLDLRTCPVNGETRSVWPSDGKLQTVAAQSTLRCLSHMLDEAIHADLTIITADGTLRAHKAVLSASSTVLHSLYLDNGDEKETSTINMEDMSQESCMALLSYLYGTIKQEDFWKHRLALLGAADKYEIGDLKDACEESLLEDLNSGNVLDRLNDAWLYQLQALKKGCFSYLFYYGKIYDVRDEMDTFFRHADRELMLEMFQEVLTISK* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0543 324 Pfam BTB/POZ domain 153 257 IPR000210 GO:0005515
Gso13g0543 324 SMART BTB_4 161 259 IPR000210 GO:0005515
Gso13g0543 324 PANTHER OS08G0495500 PROTEIN-RELATED 1 324 IPR044714 -
Gso13g0543 324 CDD BTB_POZ_ZBTB_KLHL-like 160 242 - -
Gso13g0543 324 ProSiteProfiles BTB domain profile. 161 220 IPR000210 GO:0005515
Gso13g0543 324 Gene3D Potassium Channel Kv1.1; Chain A 135 288 IPR011333 -
Gso13g0543 324 SUPERFAMILY POZ domain 144 257 IPR011333 -
Gso13g0543 324 PANTHER OS08G0103600 PROTEIN 1 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0543 Gso-Chr13 18313995 18319269 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Gso13g0543 BTB 1.2e-19 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0543 K10523 - gmx:100786905 659.448