Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0540 ATGGAGCTTGTGAATAGCCAAAAGCTAAAACAACATGAGCAGCAACAGCATTTTCATGTGTTGGTGGTAGATGATAGTGTCATAGATAGGAAGCTTTTGGAGAGGCTCCTAAGAGATTCTTCATGCAAAGCTACCTTTGTGGATTCTGGAGACAAGGCTTTGAAATTTCTTGGCCTGCTTGATGATGACCTTGATAATTCTTCCTCAACTTCTTCGGAATCATTGCAACTAAACGGAATCAAAGTGAATATGATCATGACAGACTACTGCATGCCAGGAATGAGTGGCTATGATTTACTCAAACGAATCAAGGGATCTTCTTGGAAAGATGTGCCCGTGGTCATAATGTCATCAGAAAACGTACCATCTAGAATCAGCATGTGCTTGGAAGGAGGGGCAGAGAAGTTTCTATTGAAGCCTCTTCAGCAATCAGATTTAGAAAAGCTTCAGCCATGCTTTCTCAAATCCTCTGATAATTCTAGTGAACAAGACCAATCTGCTGAAAGATCTGTAGCTTCTCACGATAATGACAATTATATCGATACCATTAAGGCATTGTGTCCGGAGCATGGTTTTAAACTGCAATTTGTATCGACAATTGCAACTACAATATTGCGATTTTGGAAGTCTCTATAG 636 0.4009 MELVNSQKLKQHEQQQHFHVLVVDDSVIDRKLLERLLRDSSCKATFVDSGDKALKFLGLLDDDLDNSSSTSSESLQLNGIKVNMIMTDYCMPGMSGYDLLKRIKGSSWKDVPVVIMSSENVPSRISMCLEGGAEKFLLKPLQQSDLEKLQPCFLKSSDNSSEQDQSAERSVASHDNDNYIDTIKALCPEHGFKLQFVSTIATTILRFWKSL* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0540 211 SUPERFAMILY CheY-like 18 148 IPR011006 -
Gso13g0540 211 SMART REC_2 18 150 IPR001789 GO:0000160
Gso13g0540 211 Pfam Response regulator receiver domain 20 148 IPR001789 GO:0000160
Gso13g0540 211 Gene3D - 19 190 - -
Gso13g0540 211 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 179 IPR045279 GO:0009736
Gso13g0540 211 PANTHER TWO-COMPONENT RESPONSE REGULATOR ORR4 7 179 - -
Gso13g0540 211 CDD REC_typeA_ARR 20 149 - -
Gso13g0540 211 ProSiteProfiles Response regulatory domain profile. 19 154 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0540 Gso-Chr13 18225161 18229361 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0540 13 173 Response Regulator Gene Family AT2G41310 55.488 9.11e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso13g0540 Response_reg 1e-18 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0540 K14492 - gmx:100790440 379.793