Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0530 ATGGCGCATAGGTTGCTGAGAGACCACGAGGCCGACGGCTGGGAGCGCTCAGATTTCCCCATCATCTGCGAATCTTGCCTCGGCGACAGCCCCTACGTTCGAATGACAAAAGCAGAGTATGATAAGGAGTGCAAGATTTGTACACGGCCATTCACTGTTTTTAGATGGAGACCTGGTCGAGATGCAAGATATAAGAAAACTGAGATCTGTCAGACATGTAGTAAGTTGAAAAATGTCTGTCAAGTGTGCCTTCTGGATCTTGAATATGGACTACCAGTTCAAGTTCGAGACTCGGCTCTTAGTATTGATTCCAATGATGCCATTCCAAAGAGTGATGTTAATAGGGAGTATTTTGCTGAAGAGCATGACCGTAAGGCTAGAGCTGGTATAGATTATGAATCCTCTTATGGTAAAGTACGCCCAAATGATACTATCCTGAAGCTTCAAAGGACAACTCCATATTACAAAAGAAATCGAGCGCATATTTGCAGTTTCTACATAAGGGGTGAATGTACCAGAGGAGCTGAGTGCCCTTATAGACATGAGATGCCAGTAACTGGGGAATTGTCTCAACAAAATATTAAAGATCGTTATTATGGGGTGAATGATCCAGTGGCTTTGAAGCTACTTGGCAAGGCAGGAGAGATGTCCACTCTGGAGGCTCCTGAGGATGAGAGCATTAAAACTCTTTATGTTGGTGGACTTGATGCTAGGGTCACTGAGCAGGATTTGCGGGATCACTTCTATGCCCATGGAGAAATTGAATCCATCAAAATGGTTCTCCAACGGGCTTGTGCTTTTGTAACATATACAACCAGAGAAGGTGCAGAAAAGGCAGCAGAAGAACTCTCCAACAAATTGGTTATTAAGGGCCTAAGGCTAAAGCTGATGTGGGGCAGGCCTCAGACAACGAAACCCGAGTCTGACGGTTCTGATCAAGCAAGGCAGCAGGCATCTGTAGCTCATAGTGGATTGTTGCCTCGGGCAGTTATATCACAGAAGCAAAGCCAGGACCAAACCCAAGGAATGCTTTACTATAACAATCTACCACCTCCTCAGCAGGAAAGAAGCTACTACCCATCAATGGATCCTCGAAGAATGGGAGCTCTTGTTTCATCCCAAGATGCTCCTGGTGGGCCTTCTGGGTCAGAGGAGAACAACCCCGGTTTGGAGAAGCAGCAAATGCAACATTATGCCCATCCAATGATGCCTCCTCCACCTGGTCAATATCATCAGTATTATCCACCATATGGTTATATGCCACCACCTCCCCCTTATCATCAATACCCACAACCTCCATACAATGCTGCAGCGGCTCCATCCCAGCCACCAGCTGCAAATCATCCTTATCCACATTCTATGCAGCCAGGTTCTTCATAA 1380 0.4609 MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTKAEYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDSALSIDSNDAIPKSDVNREYFAEEHDRKARAGIDYESSYGKVRPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMSTLEAPEDESIKTLYVGGLDARVTEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQTTKPESDGSDQARQQASVAHSGLLPRAVISQKQSQDQTQGMLYYNNLPPPQQERSYYPSMDPRRMGALVSSQDAPGGPSGSEENNPGLEKQQMQHYAHPMMPPPPGQYHQYYPPYGYMPPPPPYHQYPQPPYNAAAAPSQPPAANHPYPHSMQPGSS* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0530 459 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
Gso13g0530 459 MobiDBLite consensus disorder prediction 299 459 - -
Gso13g0530 459 MobiDBLite consensus disorder prediction 376 393 - -
Gso13g0530 459 MobiDBLite consensus disorder prediction 329 355 - -
Gso13g0530 459 MobiDBLite consensus disorder prediction 400 450 - -
Gso13g0530 459 Pfam Torus domain 143 194 IPR032297 -
Gso13g0530 459 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 288 IPR000504 GO:0003723
Gso13g0530 459 Gene3D - 149 209 - -
Gso13g0530 459 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Gso13g0530 459 SMART rrm1_1 229 297 IPR000504 GO:0003723
Gso13g0530 459 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 49-LIKE 1 445 - -
Gso13g0530 459 Gene3D - 212 309 IPR012677 -
Gso13g0530 459 SUPERFAMILY RNA-binding domain, RBD 221 309 IPR035979 GO:0003676
Gso13g0530 459 CDD RRM_RBM22 227 300 - -
Gso13g0530 459 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 445 IPR039171 GO:0003723
Gso13g0530 459 MobiDBLite consensus disorder prediction 304 320 - -
Gso13g0530 459 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Gso13g0530 459 SMART c3hfinal6 157 183 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0530 Gso-Chr13 17964006 17968441 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0530 221 414 C2H2 Transcription Factor Family AT2G19380 24.762 1.84e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0530 K12872 - gmx:100789382 827.394